Magnesium in PDB 4uy8: Molecular Basis For the Ribosome Functioning As A L-Tryptophan Sensor - Cryo-Em Structure of A Tnac Stalled E.Coli Ribosome

The structure of Molecular Basis For the Ribosome Functioning As A L-Tryptophan Sensor - Cryo-Em Structure of A Tnac Stalled E.Coli Ribosome also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 143;

Binding sites:

The binding sites of Magnesium atom in the Molecular Basis For the Ribosome Functioning As A L-Tryptophan Sensor - Cryo-Em Structure of A Tnac Stalled E.Coli Ribosome (pdb code 4uy8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 143 binding sites of Magnesium where determined in the Molecular Basis For the Ribosome Functioning As A L-Tryptophan Sensor - Cryo-Em Structure of A Tnac Stalled E.Coli Ribosome, PDB code: 4uy8:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 143 in the Molecular Basis For the Ribosome Functioning As A L-Tryptophan Sensor - Cryo-Em Structure of A Tnac Stalled E.Coli Ribosome


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Molecular Basis For the Ribosome Functioning As A L-Tryptophan Sensor - Cryo-Em Structure of A Tnac Stalled E.Coli Ribosome within 5.0Å range: probe atom residue distance (Å) B Occ 4:Mg101 b:20.6 occ:1.00 O A:HOH3777 2.0 12.2 1.0 O A:HOH3812 2.1 18.2 1.0 O A:HOH3779 2.6 4.3 1.0 O A:HOH3813 2.8 11.8 1.0 OD2 4:ASP20 3.3 43.5 1.0 OD1 4:ASP20 3.8 52.0 1.0 CG 4:ASP20 3.8 52.5 1.0 N7 A:G2742 4.5 10.8 1.0 O2 A:C2755 4.6 26.2 1.0 O6 A:G2742 4.6 9.6 1.0 OP2 A:A2741 4.7 5.1 1.0

Magnesium binding site 2 out of 143 in the Molecular Basis For the Ribosome Functioning As A L-Tryptophan Sensor - Cryo-Em Structure of A Tnac Stalled E.Coli Ribosome


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Molecular Basis For the Ribosome Functioning As A L-Tryptophan Sensor - Cryo-Em Structure of A Tnac Stalled E.Coli Ribosome within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3001 b:25.7 occ:1.00 O A:HOH3202 2.1 13.8 1.0 O A:HOH3204 2.3 0.0 1.0 O A:HOH3205 2.8 0.0 1.0 O4 A:U18 3.6 14.3 1.0 O4 A:U521 4.1 17.3 1.0 N6 A:A19 4.2 13.0 1.0 C4 A:U18 4.6 11.6 1.0 O6 A:G520 4.8 22.6 1.0 N7 A:G17 4.9 18.1 1.0 N6 A:A522 4.9 17.1 1.0 C5 A:U18 5.0 11.6 1.0

Magnesium binding site 3 out of 143 in the Molecular Basis For the Ribosome Functioning As A L-Tryptophan Sensor - Cryo-Em Structure of A Tnac Stalled E.Coli Ribosome


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Molecular Basis For the Ribosome Functioning As A L-Tryptophan Sensor - Cryo-Em Structure of A Tnac Stalled E.Coli Ribosome within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3002 b:11.2 occ:1.00 O A:HOH3212 1.9 11.9 1.0 O A:HOH3207 2.0 9.4 1.0 O A:HOH3211 2.0 18.0 1.0 O A:HOH3210 2.0 8.4 1.0 O A:HOH3209 2.5 17.3 1.0 O4 A:U29 3.7 18.5 1.0 O6 A:G30 4.1 14.3 1.0 C5 A:U29 4.1 9.8 1.0 OP2 A:U29 4.1 4.1 1.0 C4 A:U29 4.1 10.6 1.0 OP2 A:A28 4.3 12.8 1.0 OP2 A:A447 4.6 10.4 1.0 O6 A:G474 4.6 9.9 1.0 N7 A:G30 4.8 13.6 1.0 N4 A:C31 4.9 12.4 1.0 O6 A:G473 4.9 14.4 1.0 O5' A:A28 4.9 15.5 1.0

Magnesium binding site 4 out of 143 in the Molecular Basis For the Ribosome Functioning As A L-Tryptophan Sensor - Cryo-Em Structure of A Tnac Stalled E.Coli Ribosome


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Molecular Basis For the Ribosome Functioning As A L-Tryptophan Sensor - Cryo-Em Structure of A Tnac Stalled E.Coli Ribosome within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3003 b:20.2 occ:1.00 O A:HOH3213 2.0 5.2 1.0 OP1 A:U120 2.3 9.8 1.0 O A:HOH3215 2.3 6.8 1.0 O A:HOH3217 2.4 8.9 1.0 O A:HOH3221 2.7 15.1 1.0 O A:HOH3220 2.8 10.9 1.0 P A:U120 3.3 19.7 1.0 O6 A:G123 3.7 14.2 1.0 OP2 A:U120 3.7 38.9 1.0 O6 A:G122 3.7 13.0 1.0 O3' A:A119 3.8 27.0 1.0 N7 A:G123 4.3 13.1 1.0 N7 A:G122 4.3 14.8 1.0 C6 A:G122 4.5 12.5 1.0 C6 A:G123 4.5 13.7 1.0 O6 A:G124 4.6 15.2 1.0 MG A:MG3004 4.6 16.6 1.0 O5' A:U120 4.7 11.0 1.0 O2' A:A119 4.7 16.8 1.0 C5 A:G122 4.7 11.6 1.0 C5 A:G123 4.8 12.6 1.0 N4 A:C128 4.8 7.1 1.0 C5' A:U120 5.0 15.6 1.0

Magnesium binding site 5 out of 143 in the Molecular Basis For the Ribosome Functioning As A L-Tryptophan Sensor - Cryo-Em Structure of A Tnac Stalled E.Coli Ribosome


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Molecular Basis For the Ribosome Functioning As A L-Tryptophan Sensor - Cryo-Em Structure of A Tnac Stalled E.Coli Ribosome within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3004 b:16.6 occ:1.00 O A:HOH3219 2.1 10.8 1.0 O A:HOH3218 2.2 12.2 1.0 O A:HOH3221 2.3 15.1 1.0 O A:HOH3809 2.7 5.6 1.0 OP1 A:U120 3.2 9.8 1.0 OP2 A:G123 3.5 8.8 1.0 O3' A:A119 3.8 27.0 1.0 C5' A:U120 3.8 15.6 1.0 O5' A:U120 4.0 11.0 1.0 P A:U120 4.0 19.7 1.0 OP2 A:G122 4.1 10.9 1.0 N7 A:G123 4.5 13.1 1.0 O6 A:G124 4.6 15.2 1.0 MG A:MG3003 4.6 20.2 1.0 O A:HOH3220 4.7 10.9 1.0 C3' A:A119 4.9 27.6 1.0 P A:G123 4.9 8.8 1.0 C8 A:G123 4.9 13.5 1.0 P A:G122 5.0 16.2 1.0

Magnesium binding site 6 out of 143 in the Molecular Basis For the Ribosome Functioning As A L-Tryptophan Sensor - Cryo-Em Structure of A Tnac Stalled E.Coli Ribosome


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Molecular Basis For the Ribosome Functioning As A L-Tryptophan Sensor - Cryo-Em Structure of A Tnac Stalled E.Coli Ribosome within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3005 b:32.5 occ:1.00 O A:HOH3224 2.8 15.7 1.0 O A:HOH3223 3.4 16.3 1.0 OP2 A:U427 3.6 37.1 1.0 OP2 A:C426 3.7 13.0 1.0 OP2 A:A219 3.8 14.1 1.0 N7 A:G220 3.9 22.1 1.0 O6 A:G220 4.1 21.3 1.0 P A:C426 4.3 41.2 1.0 OP1 A:C426 4.4 30.4 1.0 O5' A:C426 4.4 28.1 1.0 C5 A:G220 4.7 15.1 1.0 C5 A:U427 4.8 24.9 1.0 C6 A:G220 4.8 19.8 1.0 C8 A:G220 4.9 22.9 1.0

Magnesium binding site 7 out of 143 in the Molecular Basis For the Ribosome Functioning As A L-Tryptophan Sensor - Cryo-Em Structure of A Tnac Stalled E.Coli Ribosome


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Molecular Basis For the Ribosome Functioning As A L-Tryptophan Sensor - Cryo-Em Structure of A Tnac Stalled E.Coli Ribosome within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3006 b:19.9 occ:1.00 O A:HOH3228 2.0 10.2 1.0 O A:HOH3231 2.5 22.7 1.0 OP2 A:G297 3.0 28.9 1.0 O6 A:G298 3.4 19.0 1.0 OP1 A:G338 3.8 24.0 1.0 N7 A:G298 4.0 22.8 1.0 C6 A:G298 4.3 19.0 1.0 N7 A:G297 4.4 27.4 1.0 P A:G297 4.4 28.5 1.0 OP2 A:U296 4.4 15.0 1.0 C5 A:G298 4.5 21.8 1.0 C8 A:G297 4.6 27.2 1.0 O5' A:G297 4.8 12.2 1.0 P A:G338 4.8 26.4 1.0

Magnesium binding site 8 out of 143 in the Molecular Basis For the Ribosome Functioning As A L-Tryptophan Sensor - Cryo-Em Structure of A Tnac Stalled E.Coli Ribosome


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Molecular Basis For the Ribosome Functioning As A L-Tryptophan Sensor - Cryo-Em Structure of A Tnac Stalled E.Coli Ribosome within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3007 b:19.0 occ:1.00 O A:HOH3235 1.8 5.7 1.0 O A:HOH3234 2.2 30.8 1.0 OP1 A:U419 3.0 16.9 1.0 O A:HOH3236 3.5 21.6 1.0 P A:U419 4.4 25.8 1.0 N7 A:G230 4.8 15.8 1.0

Magnesium binding site 9 out of 143 in the Molecular Basis For the Ribosome Functioning As A L-Tryptophan Sensor - Cryo-Em Structure of A Tnac Stalled E.Coli Ribosome


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Molecular Basis For the Ribosome Functioning As A L-Tryptophan Sensor - Cryo-Em Structure of A Tnac Stalled E.Coli Ribosome within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3008 b:2.4 occ:1.00 O A:HOH3239 1.8 3.5 1.0 OP2 A:G450 1.9 2.5 1.0 O A:HOH3238 2.2 2.0 1.0 O A:HOH3237 2.6 5.2 1.0 O A:HOH3241 2.9 7.7 1.0 P A:G450 3.0 6.6 1.0 O A:HOH3240 3.2 3.3 1.0 O5' A:G450 3.4 5.4 1.0 OP2 A:U451 3.5 5.5 1.0 OP1 A:G450 3.6 3.8 1.0 OP2 A:G452 4.0 10.9 1.0 O3' A:A449 4.3 6.7 1.0 N E:GLY81 4.3 4.7 1.0 CA E:GLY81 4.4 10.5 1.0 C5' A:G450 4.8 3.7 1.0 N E:GLY82 4.8 1.4 1.0 OP1 A:A449 4.8 4.7 1.0 CG2 E:VAL83 4.8 2.9 1.0 C3' A:A449 4.8 6.3 1.0 P A:U451 4.9 6.7 1.0 O5' A:A449 5.0 0.0 1.0

Magnesium binding site 10 out of 143 in the Molecular Basis For the Ribosome Functioning As A L-Tryptophan Sensor - Cryo-Em Structure of A Tnac Stalled E.Coli Ribosome


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Molecular Basis For the Ribosome Functioning As A L-Tryptophan Sensor - Cryo-Em Structure of A Tnac Stalled E.Coli Ribosome within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3009 b:8.3 occ:1.00 O A:HOH3243 1.8 3.0 1.0 O A:HOH3244 1.9 7.8 1.0 O6 A:G450 1.9 12.0 1.0 OP1 A:A453 1.9 7.4 1.0 C6 A:G450 3.1 9.6 1.0 P A:A453 3.2 9.3 1.0 O A:HOH3242 3.4 15.3 1.0 O5' A:A453 3.6 5.4 1.0 C5' A:A453 3.7 6.2 1.0 OP1 A:A454 3.7 7.1 1.0 C5 A:G450 4.0 8.3 1.0 OP2 A:A453 4.1 7.5 1.0 N7 A:G450 4.1 12.7 1.0 N1 A:G450 4.2 6.5 1.0 O3' A:G452 4.3 3.8 1.0 P A:A454 4.6 9.4 1.0 N7 A:A449 4.8 7.7 1.0 OP2 A:A454 4.8 6.0 1.0 N6 A:A449 4.9 7.0 1.0 C4' A:A453 4.9 6.2 1.0

L.Bischoff, O.Berninghausen, R.Beckmann. Molecular Basis For the Ribosome Functioning As An L- Tryptophan Sensor. Cell Rep. V. 9 469 2014.
ISSN: ISSN 2211-1247
PubMed: 25310980
DOI: 10.1016/J.CELREP.2014.09.011