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Magnesium in PDB 4xdr: Crystal Structure of Treponema Pallidum TP0796 Flavin Trafficking Protein, A Bifunctional Fmn Transferase/Fad Pyrophosphatase, D284A Mutant, Adn Bound Form

Enzymatic activity of Crystal Structure of Treponema Pallidum TP0796 Flavin Trafficking Protein, A Bifunctional Fmn Transferase/Fad Pyrophosphatase, D284A Mutant, Adn Bound Form

All present enzymatic activity of Crystal Structure of Treponema Pallidum TP0796 Flavin Trafficking Protein, A Bifunctional Fmn Transferase/Fad Pyrophosphatase, D284A Mutant, Adn Bound Form:
2.7.1.180;

Protein crystallography data

The structure of Crystal Structure of Treponema Pallidum TP0796 Flavin Trafficking Protein, A Bifunctional Fmn Transferase/Fad Pyrophosphatase, D284A Mutant, Adn Bound Form, PDB code: 4xdr was solved by D.R.Tomchick, C.A.Brautigam, R.K.Deka, M.V.Norgard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.16 / 1.40
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 116.834, 46.792, 57.725, 90.00, 102.56, 90.00
R / Rfree (%) 17.2 / 19.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Treponema Pallidum TP0796 Flavin Trafficking Protein, A Bifunctional Fmn Transferase/Fad Pyrophosphatase, D284A Mutant, Adn Bound Form (pdb code 4xdr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Treponema Pallidum TP0796 Flavin Trafficking Protein, A Bifunctional Fmn Transferase/Fad Pyrophosphatase, D284A Mutant, Adn Bound Form, PDB code: 4xdr:

Magnesium binding site 1 out of 1 in 4xdr

Go back to Magnesium Binding Sites List in 4xdr
Magnesium binding site 1 out of 1 in the Crystal Structure of Treponema Pallidum TP0796 Flavin Trafficking Protein, A Bifunctional Fmn Transferase/Fad Pyrophosphatase, D284A Mutant, Adn Bound Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Treponema Pallidum TP0796 Flavin Trafficking Protein, A Bifunctional Fmn Transferase/Fad Pyrophosphatase, D284A Mutant, Adn Bound Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:25.0
occ:1.00
 O A:HOH671 2.1 27.3 1.0
O A:HIS267 2.1 21.6 1.0
O A:HOH628 2.1 24.4 1.0
O A:HOH675 2.3 20.1 1.0
O A:HOH694 2.9 46.4 1.0
C A:HIS267 3.3 18.4 1.0
HA A:THR268 3.4 17.1 1.0
O A:HOH599 3.8 19.4 1.0
H A:HIS267 3.9 20.7 1.0
O A:VAL292 3.9 13.9 1.0
HB A:THR268 4.0 18.6 1.0
HB2 A:HIS267 4.1 25.4 1.0
CA A:THR268 4.2 14.3 1.0
N A:THR268 4.2 14.9 1.0
O A:HOH553 4.3 27.9 1.0
N A:HIS267 4.3 17.3 1.0
CA A:HIS267 4.3 17.1 1.0
OD2 A:ASP259 4.4 19.8 1.0
O A:HOH654 4.4 31.9 1.0
CB A:HIS267 4.6 21.2 1.0
CB A:THR268 4.6 15.5 1.0
HB1 A:ALA266 4.6 21.6 1.0
HB3 A:HIS267 4.7 25.4 1.0

Reference:

R.K.Deka, C.A.Brautigam, W.Z.Liu, D.R.Tomchick, M.V.Norgard. Evidence For Posttranslational Protein Flavinylation in the Syphilis Spirochete Treponema Pallidum: Structural and Biochemical Insights From the Catalytic Core of A Periplasmic Flavin-Trafficking Protein. Mbio V. 6 00519 2015.
ISSN: ESSN 2150-7511
PubMed: 25944861
DOI: 10.1128/MBIO.00519-15
Page generated: Tue Aug 20 15:26:20 2024

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