Atomistry » Magnesium » PDB 4yf6-4yoy » 4ykp
Atomistry »
  Magnesium »
    PDB 4yf6-4yoy »
      4ykp »

Magnesium in PDB 4ykp: Mnemiopsis Leidyi ML032222A Iglur Lbd Serine Complex

Protein crystallography data

The structure of Mnemiopsis Leidyi ML032222A Iglur Lbd Serine Complex, PDB code: 4ykp was solved by R.G.Alberstein, M.L.Mayer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.98 / 1.46
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 45.862, 123.420, 54.258, 90.00, 112.10, 90.00
R / Rfree (%) 13.7 / 16.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Mnemiopsis Leidyi ML032222A Iglur Lbd Serine Complex (pdb code 4ykp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Mnemiopsis Leidyi ML032222A Iglur Lbd Serine Complex, PDB code: 4ykp:

Magnesium binding site 1 out of 1 in 4ykp

Go back to Magnesium Binding Sites List in 4ykp
Magnesium binding site 1 out of 1 in the Mnemiopsis Leidyi ML032222A Iglur Lbd Serine Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Mnemiopsis Leidyi ML032222A Iglur Lbd Serine Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg303

b:13.3
occ:0.67
OE2 A:GLU213 2.0 25.0 1.0
OE2 B:GLU213 2.0 20.0 1.0
OD1 B:ASP110 2.1 22.8 1.0
OD1 A:ASP110 2.1 25.5 1.0
O A:HOH487 2.1 19.7 1.0
O B:HOH509 2.1 19.2 1.0
CD A:GLU213 2.9 20.7 1.0
CD B:GLU213 2.9 18.4 1.0
HH22 B:ARG236 3.1 36.1 1.0
CG A:ASP110 3.1 29.5 1.0
HH22 A:ARG236 3.1 33.3 1.0
CG B:ASP110 3.1 31.1 1.0
OE1 B:GLU213 3.2 23.8 1.0
OE1 A:GLU213 3.3 23.1 1.0
HH12 B:ARG236 3.5 29.8 1.0
HH12 A:ARG236 3.5 26.7 1.0
OD2 A:ASP110 3.6 31.3 1.0
OD2 B:ASP110 3.7 32.9 1.0
NH2 B:ARG236 3.9 30.1 1.0
O B:HOH606 3.9 28.1 1.0
NH2 A:ARG236 3.9 27.7 1.0
O A:HOH587 4.1 23.9 1.0
NH1 B:ARG236 4.2 24.9 1.0
NH1 A:ARG236 4.2 22.2 1.0
HA B:ASP110 4.2 17.4 1.0
HA A:ASP110 4.3 19.6 1.0
CG A:GLU213 4.3 17.7 1.0
CB A:ASP110 4.3 19.7 1.0
CG B:GLU213 4.3 15.9 1.0
CB B:ASP110 4.3 18.6 1.0
HG2 B:PRO107 4.4 23.2 1.0
HG2 A:GLU213 4.4 21.2 1.0
HH21 B:ARG236 4.4 36.1 1.0
HG2 B:GLU213 4.5 19.1 1.0
H A:ASP110 4.5 20.4 1.0
CZ B:ARG236 4.5 24.0 1.0
HG2 A:PRO107 4.5 24.1 1.0
HH21 A:ARG236 4.5 33.3 1.0
HB2 B:ASP110 4.5 22.3 1.0
HB2 A:ASP110 4.5 23.6 1.0
CZ A:ARG236 4.6 26.4 1.0
H B:ASP110 4.6 20.1 1.0
N A:ASP110 4.6 17.0 1.0
HG3 A:GLU213 4.6 21.2 1.0
CA A:ASP110 4.6 16.3 1.0
CA B:ASP110 4.6 14.5 1.0
HG3 B:GLU213 4.6 19.1 1.0
N B:ASP110 4.6 16.7 1.0
HB2 B:PRO107 4.8 18.7 1.0
HB2 A:PRO107 4.8 20.1 1.0
HG3 B:PRO107 4.8 23.2 1.0
HG3 A:PRO107 4.9 24.1 1.0
HH11 B:ARG236 4.9 29.8 1.0
HH11 A:ARG236 4.9 26.7 1.0

Reference:

R.Alberstein, R.Grey, A.Zimmet, D.K.Simmons, M.L.Mayer. Glycine Activated Ion Channel Subunits Encoded By Ctenophore Glutamate Receptor Genes. Proc.Natl.Acad.Sci.Usa V. 112 E6048 2015.
ISSN: ESSN 1091-6490
PubMed: 26460032
DOI: 10.1073/PNAS.1513771112
Page generated: Sat Sep 28 23:21:37 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy