Atomistry » Magnesium » PDB 4z4h-4zi2 » 4zdq
Atomistry »
  Magnesium »
    PDB 4z4h-4zi2 »
      4zdq »

Magnesium in PDB 4zdq: Crystal Structure of 2-C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase (Ispd) From Burkholderia Thailandensis Complexed with Ctp

Enzymatic activity of Crystal Structure of 2-C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase (Ispd) From Burkholderia Thailandensis Complexed with Ctp

All present enzymatic activity of Crystal Structure of 2-C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase (Ispd) From Burkholderia Thailandensis Complexed with Ctp:
2.7.7.60;

Protein crystallography data

The structure of Crystal Structure of 2-C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase (Ispd) From Burkholderia Thailandensis Complexed with Ctp, PDB code: 4zdq was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.93 / 2.30
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 45.900, 138.950, 76.920, 90.00, 101.94, 90.00
R / Rfree (%) 20.5 / 25.7

Other elements in 4zdq:

The structure of Crystal Structure of 2-C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase (Ispd) From Burkholderia Thailandensis Complexed with Ctp also contains other interesting chemical elements:

Arsenic (As) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of 2-C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase (Ispd) From Burkholderia Thailandensis Complexed with Ctp (pdb code 4zdq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of 2-C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase (Ispd) From Burkholderia Thailandensis Complexed with Ctp, PDB code: 4zdq:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4zdq

Go back to Magnesium Binding Sites List in 4zdq
Magnesium binding site 1 out of 2 in the Crystal Structure of 2-C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase (Ispd) From Burkholderia Thailandensis Complexed with Ctp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of 2-C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase (Ispd) From Burkholderia Thailandensis Complexed with Ctp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:32.2
occ:1.00
O A:HOH448 2.3 29.1 1.0
O2A A:CTP301 2.3 43.9 1.0
O2B A:CTP301 2.4 26.3 1.0
O3G A:CTP301 2.4 44.0 1.0
O A:HOH454 2.6 55.7 1.0
PB A:CTP301 3.5 38.3 1.0
PG A:CTP301 3.6 45.8 1.0
PA A:CTP301 3.6 46.3 1.0
O3B A:CTP301 3.9 43.6 1.0
O3A A:CTP301 4.0 50.6 1.0
O2G A:CTP301 4.0 44.5 1.0
NH2 A:ARG17 4.1 35.2 1.0
O5' A:CTP301 4.2 47.6 1.0
O A:HOH449 4.3 40.0 1.0
C6 A:CTP301 4.5 24.5 1.0
C5 A:CTP301 4.6 25.4 1.0
O1B A:CTP301 4.8 35.7 1.0
O1A A:CTP301 4.8 34.4 1.0
O1G A:CTP301 4.8 52.1 1.0
CZ A:ARG17 5.0 44.2 1.0

Magnesium binding site 2 out of 2 in 4zdq

Go back to Magnesium Binding Sites List in 4zdq
Magnesium binding site 2 out of 2 in the Crystal Structure of 2-C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase (Ispd) From Burkholderia Thailandensis Complexed with Ctp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of 2-C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase (Ispd) From Burkholderia Thailandensis Complexed with Ctp within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg302

b:57.5
occ:1.00
O2B D:CTP301 2.2 83.8 1.0
O2A D:CTP301 2.4 85.8 1.0
PA D:CTP301 3.5 84.6 1.0
O2G D:CTP301 3.5 91.7 1.0
PB D:CTP301 3.6 85.6 1.0
O5' D:CTP301 3.9 84.8 1.0
O1G D:CTP301 3.9 89.3 1.0
O3A D:CTP301 4.0 86.5 1.0
PG D:CTP301 4.2 91.0 1.0
O D:HOH426 4.2 42.5 1.0
C6 D:CTP301 4.2 79.2 1.0
C5 D:CTP301 4.3 79.5 1.0
O3B D:CTP301 4.3 88.8 1.0
O D:HOH437 4.6 47.0 1.0
O1B D:CTP301 4.7 82.6 1.0
O1A D:CTP301 4.8 81.5 1.0

Reference:

Seattle Structural Genomics Center For Infectious Disease(Ssgcid), D.M.Dranow, J.W.Fairman, P.G.Pierce, D.Lorimer, T.E.Edwards. Crystal Structure of 2-C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase (Ispd) From Burkholderia Thailandensis Complexed with Ctp To Be Published.
Page generated: Sat Sep 28 23:59:00 2024

Last articles

Au in 7PV5
Au in 7PVJ
Au in 7FF8
Au in 7BOM
Au in 7MQ6
Au in 7EDW
Au in 7FF0
Au in 7EDU
Au in 7EEK
Au in 7DAU
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy