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Magnesium in PDB 4zi5: Crystal Structure of Dienelactone Hydrolase-Like Promiscuous Phospotriesterase P91 From Metagenomic Libraries

Enzymatic activity of Crystal Structure of Dienelactone Hydrolase-Like Promiscuous Phospotriesterase P91 From Metagenomic Libraries

All present enzymatic activity of Crystal Structure of Dienelactone Hydrolase-Like Promiscuous Phospotriesterase P91 From Metagenomic Libraries:
3.1.8.1;

Protein crystallography data

The structure of Crystal Structure of Dienelactone Hydrolase-Like Promiscuous Phospotriesterase P91 From Metagenomic Libraries, PDB code: 4zi5 was solved by P.-Y.Colin, G.Fischer, M.Hyvonen, F.Hollfelder, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 61.57 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 55.613, 73.414, 113.057, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 20.7

Other elements in 4zi5:

The structure of Crystal Structure of Dienelactone Hydrolase-Like Promiscuous Phospotriesterase P91 From Metagenomic Libraries also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Dienelactone Hydrolase-Like Promiscuous Phospotriesterase P91 From Metagenomic Libraries (pdb code 4zi5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Dienelactone Hydrolase-Like Promiscuous Phospotriesterase P91 From Metagenomic Libraries, PDB code: 4zi5:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4zi5

Go back to Magnesium Binding Sites List in 4zi5
Magnesium binding site 1 out of 2 in the Crystal Structure of Dienelactone Hydrolase-Like Promiscuous Phospotriesterase P91 From Metagenomic Libraries


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Dienelactone Hydrolase-Like Promiscuous Phospotriesterase P91 From Metagenomic Libraries within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:24.7
occ:1.00
 O A:HOH438 2.0 19.8 1.0
O A:HOH606 2.0 25.6 1.0
O A:HOH611 2.1 25.7 1.0
O A:HOH450 2.1 23.2 1.0
O A:HOH548 2.1 18.1 1.0
O A:HOH635 2.1 26.1 1.0
O A:LYS186 4.0 16.0 1.0
O A:HOH508 4.1 20.3 1.0
O A:HOH515 4.1 13.7 1.0
O A:HOH621 4.3 26.1 1.0
O A:HOH466 4.3 25.6 1.0
O A:ILE155 4.3 14.8 1.0
O A:ASP185 4.3 19.0 1.0
O A:HOH401 4.3 17.6 0.5
O A:HOH605 4.4 37.9 1.0
O A:HOH409 4.5 28.7 1.0
C A:LYS186 4.6 16.9 1.0
CA A:VAL187 4.6 14.7 1.0
N A:VAL187 4.8 15.7 1.0
O A:HOH604 4.9 26.8 1.0

Magnesium binding site 2 out of 2 in 4zi5

Go back to Magnesium Binding Sites List in 4zi5
Magnesium binding site 2 out of 2 in the Crystal Structure of Dienelactone Hydrolase-Like Promiscuous Phospotriesterase P91 From Metagenomic Libraries


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Dienelactone Hydrolase-Like Promiscuous Phospotriesterase P91 From Metagenomic Libraries within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg302

b:25.5
occ:1.00
 O B:HOH445 2.0 22.3 1.0
O B:HOH603 2.0 28.3 1.0
O B:HOH591 2.1 22.3 1.0
O B:HOH620 2.1 24.7 1.0
O B:HOH458 2.1 23.6 1.0
O B:HOH462 2.1 17.0 1.0
O B:LYS186 4.1 16.5 1.0
O B:HOH504 4.1 14.4 1.0
O B:HOH542 4.2 20.4 1.0
O B:HOH477 4.3 31.1 1.0
O B:ILE155 4.3 15.8 1.0
O B:HOH592 4.3 35.4 1.0
O B:ASP185 4.4 18.6 1.0
O B:HOH613 4.4 23.0 1.0
O B:HOH407 4.4 34.2 1.0
CA B:VAL187 4.6 15.6 1.0
C B:LYS186 4.6 16.7 1.0
N B:VAL187 4.9 15.7 1.0
O B:HOH589 5.0 23.1 1.0

Reference:

P.Y.Colin, B.Kintses, F.Gielen, C.M.Miton, G.Fischer, M.F.Mohamed, M.Hyvonen, D.P.Morgavi, D.B.Janssen, F.Hollfelder. Ultrahigh-Throughput Discovery of Promiscuous Enzymes By Picodroplet Functional Metagenomics. Nat Commun V. 6 10008 2015.
ISSN: ESSN 2041-1723
PubMed: 26639611
DOI: 10.1038/NCOMMS10008
Page generated: Sun Sep 29 00:02:39 2024

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