Atomistry » Magnesium » PDB 4zi3-4zp1 » 4zlu
Atomistry »
  Magnesium »
    PDB 4zi3-4zp1 »
      4zlu »

Magnesium in PDB 4zlu: Lipomyces Starkeyi Levoglucosan Kinase Bound to Levoglucosan, Adp and Magnesium.

Protein crystallography data

The structure of Lipomyces Starkeyi Levoglucosan Kinase Bound to Levoglucosan, Adp and Magnesium., PDB code: 4zlu was solved by J.P.Bacik, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.06 / 1.80
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 114.857, 114.857, 234.766, 90.00, 90.00, 90.00
R / Rfree (%) 18.8 / 21.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Lipomyces Starkeyi Levoglucosan Kinase Bound to Levoglucosan, Adp and Magnesium. (pdb code 4zlu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Lipomyces Starkeyi Levoglucosan Kinase Bound to Levoglucosan, Adp and Magnesium., PDB code: 4zlu:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4zlu

Go back to Magnesium Binding Sites List in 4zlu
Magnesium binding site 1 out of 2 in the Lipomyces Starkeyi Levoglucosan Kinase Bound to Levoglucosan, Adp and Magnesium.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Lipomyces Starkeyi Levoglucosan Kinase Bound to Levoglucosan, Adp and Magnesium. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg603

b:23.8
occ:1.00
O A:HOH991 1.9 22.6 1.0
O2B A:ADP601 2.0 23.4 1.0
OE2 A:GLU362 2.1 20.0 1.0
O A:HOH730 2.1 17.8 1.0
OE1 A:GLU362 2.3 23.1 1.0
O A:HOH1016 2.3 25.9 1.0
CD A:GLU362 2.5 21.4 1.0
PB A:ADP601 3.3 18.4 1.0
O3B A:ADP601 3.7 12.4 1.0
O3A A:ADP601 3.8 17.9 1.0
ND2 A:ASN186 3.9 13.5 1.0
O A:HOH754 3.9 27.5 1.0
CG A:GLU362 4.0 15.6 1.0
O A:HOH709 4.0 20.4 1.0
O2A A:ADP601 4.0 18.5 1.0
OD1 A:ASN186 4.3 15.8 1.0
CA A:GLY188 4.3 18.9 1.0
O6 A:4PW602 4.3 43.4 1.0
O A:HOH738 4.3 19.1 1.0
O A:HOH1077 4.3 18.3 1.0
O A:HOH1011 4.4 34.0 1.0
O A:HOH739 4.4 17.7 1.0
CG A:ASN186 4.5 17.0 1.0
PA A:ADP601 4.5 19.5 1.0
O1B A:ADP601 4.6 20.8 1.0
CA A:GLY22 4.6 17.1 1.0
C6 A:4PW602 4.6 26.3 1.0
ND2 A:ASN20 4.8 21.1 1.0
CB A:GLU362 4.8 13.8 1.0
N A:GLY188 4.9 16.4 1.0
O A:HOH704 4.9 26.1 1.0

Magnesium binding site 2 out of 2 in 4zlu

Go back to Magnesium Binding Sites List in 4zlu
Magnesium binding site 2 out of 2 in the Lipomyces Starkeyi Levoglucosan Kinase Bound to Levoglucosan, Adp and Magnesium.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Lipomyces Starkeyi Levoglucosan Kinase Bound to Levoglucosan, Adp and Magnesium. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg604

b:20.8
occ:1.00
O1B A:ADP601 2.0 20.8 1.0
OD1 A:ASP26 2.0 22.8 1.0
O A:HOH743 2.1 20.9 1.0
O1A A:ADP601 2.1 17.3 1.0
O A:HOH868 2.2 23.7 1.0
O A:HOH738 2.2 19.1 1.0
CG A:ASP26 3.1 27.7 1.0
PB A:ADP601 3.1 18.4 1.0
PA A:ADP601 3.4 19.5 1.0
O3A A:ADP601 3.5 17.9 1.0
OD2 A:ASP26 3.5 33.8 1.0
O2B A:ADP601 3.6 23.4 1.0
OD2 A:ASP29 3.8 27.4 1.0
N A:GLY22 4.0 19.4 1.0
N A:ASP26 4.2 24.9 1.0
O A:GLY27 4.2 24.7 1.0
N A:GLY27 4.2 23.4 1.0
C5' A:ADP601 4.3 26.2 1.0
O5' A:ADP601 4.3 20.0 1.0
CB A:ASP26 4.4 24.9 1.0
O3B A:ADP601 4.4 12.4 1.0
O2A A:ADP601 4.4 18.5 1.0
OE1 A:GLU53 4.4 53.2 1.0
CA A:GLY22 4.5 17.1 1.0
CB A:SER24 4.5 20.5 1.0
CA A:ASP26 4.7 26.5 1.0
O A:GLY22 4.7 19.2 1.0
CG A:ASP29 4.8 29.9 1.0
N A:MET25 4.8 19.3 1.0
C A:GLY22 4.9 16.4 1.0
OD1 A:ASP29 4.9 39.0 1.0
C A:ASP26 4.9 29.2 1.0

Reference:

J.P.Bacik, J.R.Klesmith, T.A.Whitehead, L.R.Jarboe, C.J.Unkefer, B.L.Mark, R.Michalczyk. Producing Glucose 6-Phosphate From Cellulosic Biomass: Structural Insights Into Levoglucosan Bioconversion. J.Biol.Chem. V. 290 26638 2015.
ISSN: ESSN 1083-351X
PubMed: 26354439
DOI: 10.1074/JBC.M115.674614
Page generated: Sun Sep 29 00:04:24 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy