Magnesium in PDB 5aor: Structure of Mle Rna Adp ALF4 Complex

All present enzymatic activity of Structure of Mle Rna Adp ALF4 Complex:
3.6.4.13;

The structure of Structure of Mle Rna Adp ALF4 Complex, PDB code: 5aor was solved by J.R.Prabu, E.Conti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.82 / 2.08
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	154.373, 154.373, 198.194, 90.00, 90.00, 90.00
R / Rfree (%)	19.044 / 22.071

The structure of Structure of Mle Rna Adp ALF4 Complex also contains other interesting chemical elements:

Fluorine	(F)	8 atoms
Aluminium	(Al)	2 atoms

The binding sites of Magnesium atom in the Structure of Mle Rna Adp ALF4 Complex (pdb code 5aor). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Structure of Mle Rna Adp ALF4 Complex, PDB code: 5aor:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Structure of Mle Rna Adp ALF4 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Mle Rna Adp ALF4 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2160 b:27.5 occ:1.00 F3 A:ALF2161 1.9 26.6 1.0 OG1 A:THR414 2.0 26.9 1.0 O3B A:ADP2159 2.0 26.1 1.0 O A:HOH3082 2.1 26.6 1.0 O A:HOH3084 2.1 24.2 1.0 O A:HOH3083 2.2 28.3 1.0 CB A:THR414 3.1 28.9 1.0 PB A:ADP2159 3.2 28.6 1.0 O2B A:ADP2159 3.5 27.0 1.0 AL A:ALF2161 3.5 28.2 1.0 OD2 A:ASP507 3.6 32.3 1.0 OE2 A:GLU508 3.7 32.0 1.0 F4 A:ALF2161 3.9 24.9 1.0 N A:THR414 4.0 28.6 1.0 F1 A:ALF2161 4.0 29.3 1.0 O2A A:ADP2159 4.0 30.7 1.0 CG2 A:THR414 4.1 28.8 1.0 OD1 A:ASP507 4.1 31.0 1.0 CA A:THR414 4.1 29.1 1.0 CG A:ASP507 4.2 31.3 1.0 O3A A:ADP2159 4.2 31.4 1.0 CA A:SER723 4.2 31.7 1.0 O1B A:ADP2159 4.3 27.4 1.0 O A:HOH3120 4.4 21.2 1.0 PA A:ADP2159 4.5 30.4 1.0 O A:SER723 4.5 31.1 1.0 CD A:GLU508 4.6 29.4 1.0 CB A:SER723 4.8 30.9 1.0 O1A A:ADP2159 4.8 27.9 1.0 CE A:LYS413 4.8 29.7 1.0 CB A:LYS413 4.8 28.6 1.0 OE1 A:GLN440 4.9 37.8 1.0 C A:SER723 4.9 28.6 1.0 OG A:SER723 5.0 31.8 1.0 N A:SER723 5.0 29.6 1.0 NZ A:LYS413 5.0 31.6 1.0

Magnesium binding site 2 out of 3 in the Structure of Mle Rna Adp ALF4 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Mle Rna Adp ALF4 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2162 b:56.0 occ:1.00 OD1 A:ASP1099 2.2 35.6 1.0 O A:HOH3315 2.7 51.6 1.0 CG A:ASP1099 3.5 34.2 1.0 O A:ILE1100 3.8 35.1 1.0 O A:ASN1088 4.0 39.8 1.0 N A:ILE1100 4.1 30.5 1.0 C A:ILE1100 4.2 33.2 1.0 OD2 A:ASP1099 4.2 37.5 1.0 C A:ASP1099 4.3 31.9 1.0 CA A:ASP1099 4.3 32.2 1.0 CB A:ASP1099 4.5 33.6 1.0 CA A:ILE1100 4.7 31.9 1.0 CB A:ASN1088 4.7 55.7 1.0 N A:GLU1101 4.7 37.3 1.0 CD A:PRO1102 4.9 38.2 1.0 C A:ASN1088 4.9 44.0 1.0 O A:ASP1099 4.9 30.4 1.0 CA A:GLU1101 5.0 39.1 1.0

Magnesium binding site 3 out of 3 in the Structure of Mle Rna Adp ALF4 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Mle Rna Adp ALF4 Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg2160 b:25.6 occ:1.00 F3 B:ALF2161 1.8 27.7 1.0 OG1 B:THR414 2.0 25.0 1.0 O3B B:ADP2159 2.0 18.9 1.0 O B:HOH3071 2.1 23.0 1.0 O B:HOH3070 2.1 21.5 1.0 O B:HOH3069 2.1 22.5 1.0 CB B:THR414 3.1 24.6 1.0 PB B:ADP2159 3.3 22.7 1.0 AL B:ALF2161 3.5 24.3 1.0 O2B B:ADP2159 3.6 21.6 1.0 OD2 B:ASP507 3.6 29.2 1.0 OE2 B:GLU508 3.8 26.5 1.0 F4 B:ALF2161 3.8 26.5 1.0 N B:THR414 4.0 24.9 1.0 F1 B:ALF2161 4.0 26.0 1.0 OD1 B:ASP507 4.0 25.9 1.0 CG2 B:THR414 4.0 25.5 1.0 CA B:THR414 4.1 24.4 1.0 O2A B:ADP2159 4.1 23.3 1.0 CG B:ASP507 4.2 26.2 1.0 CA B:SER723 4.3 26.2 1.0 O1B B:ADP2159 4.3 23.4 1.0 O3A B:ADP2159 4.3 20.8 1.0 O B:HOH3094 4.5 21.8 1.0 O B:SER723 4.6 27.5 1.0 PA B:ADP2159 4.6 25.9 1.0 CD B:GLU508 4.6 25.7 1.0 CE B:LYS413 4.7 24.9 1.0 CB B:LYS413 4.8 25.1 1.0 CB B:SER723 4.8 27.0 1.0 O1A B:ADP2159 4.9 23.1 1.0 OE1 B:GLN440 4.9 47.8 1.0 NZ B:LYS413 4.9 25.4 1.0 C B:SER723 5.0 28.5 1.0 N B:SER723 5.0 25.3 1.0

J.R.Prabu, M.Muller, A.W.Thomae, S.Schussler, F.Bonneau, P.B.Becker, E.Conti. Structure of the Rna Helicase Mle Reveals the Molecular Mechanisms For Uridine Specificity and Rna-Atp Coupling. Mol.Cell V. 60 487 2015.
ISSN: ISSN 1097-2765
PubMed: 26545078
DOI: 10.1016/J.MOLCEL.2015.10.011