Magnesium in PDB 5b6a: Structure of Pyridoxal Kinasefrom Pseudomonas Aeruginosa

All present enzymatic activity of Structure of Pyridoxal Kinasefrom Pseudomonas Aeruginosa:
2.7.1.35;

The structure of Structure of Pyridoxal Kinasefrom Pseudomonas Aeruginosa, PDB code: 5b6a was solved by M.I.Kim, M.Hong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 2.00
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	102.547, 102.547, 61.492, 90.00, 90.00, 120.00
R / Rfree (%)	19.5 / 22.5

The binding sites of Magnesium atom in the Structure of Pyridoxal Kinasefrom Pseudomonas Aeruginosa (pdb code 5b6a). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Pyridoxal Kinasefrom Pseudomonas Aeruginosa, PDB code: 5b6a:

Magnesium binding site 1 out of 1 in the Structure of Pyridoxal Kinasefrom Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Pyridoxal Kinasefrom Pseudomonas Aeruginosa within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg302 b:48.5 occ:0.50 O A:HOH441 2.5 48.2 1.0 OD1 A:ASP225 2.8 48.1 1.0 O A:HOH454 3.3 62.2 1.0 O1 A:PO4303 3.5 61.6 0.5 CG A:ASP225 3.5 44.8 1.0 OD2 A:ASP225 3.7 44.7 1.0 CG2 A:VAL116 3.7 43.0 1.0 OD2 A:ASP114 4.1 51.6 1.0 N A:ASP225 4.3 39.2 1.0 CG1 A:VAL116 4.3 43.7 1.0 O A:HOH450 4.3 38.4 1.0 O A:HOH457 4.4 49.2 1.0 O2 A:PO4303 4.4 61.9 0.5 P A:PO4303 4.6 59.6 0.5 CB A:VAL116 4.7 42.8 1.0 C A:GLY224 4.8 39.3 1.0 CB A:ASP225 4.8 41.5 1.0 CA A:GLY224 4.8 40.8 1.0 CA A:ASP225 4.9 38.9 1.0 CG A:ASP114 4.9 49.1 1.0

M.I.Kim, M.Hong. Crystal Structure and Catalytic Mechanism of Pyridoxal Kinase From Pseudomonas Aeruginosa Biochem.Biophys.Res.Commun. V. 478 300 2016.
ISSN: ESSN 1090-2104
PubMed: 27425248
DOI: 10.1016/J.BBRC.2016.07.007