Magnesium in PDB 5cjy: Crystal Structure of A B-Form Dna Duplex Containing 5- Hydroxylmethylcytidine

The structure of Crystal Structure of A B-Form Dna Duplex Containing 5- Hydroxylmethylcytidine, PDB code: 5cjy was solved by J.Sheng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.50 / 1.55
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	25.318, 40.609, 65.403, 90.00, 90.00, 90.00
R / Rfree (%)	20.3 / 25.1

The binding sites of Magnesium atom in the Crystal Structure of A B-Form Dna Duplex Containing 5- Hydroxylmethylcytidine (pdb code 5cjy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of A B-Form Dna Duplex Containing 5- Hydroxylmethylcytidine, PDB code: 5cjy:

Magnesium binding site 1 out of 1 in the Crystal Structure of A B-Form Dna Duplex Containing 5- Hydroxylmethylcytidine


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A B-Form Dna Duplex Containing 5- Hydroxylmethylcytidine within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg101 b:16.9 occ:0.32 O A:HOH238 2.0 34.1 1.0 O A:HOH211 2.0 33.8 1.0 O B:HOH109 2.1 34.3 1.0 O B:HOH143 2.1 39.8 1.0 O B:HOH145 2.1 39.2 1.0 O A:HOH215 2.2 35.9 1.0 O A:HOH222 4.1 51.4 1.0 O A:HOH214 4.2 41.6 1.0 O B:HOH115 4.2 39.4 1.0 O6 B:DG22 4.3 25.6 1.0 O A:HOH228 4.3 38.6 1.0 O B:HOH131 4.4 33.6 1.0 O A:HOH239 4.4 36.9 1.0 C5 A:DC1 4.6 31.7 1.0 N7 A:DG2 4.7 24.2 1.0 O6 A:DG2 4.7 25.3 1.0 C6 A:DC1 4.8 28.5 1.0

J.Sheng, J.Sheng. N/A N/A.