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Magnesium in PDB 5de3: The Crystal Structure of Chlamydomonas Reinhardtii ARL3 Bound to Gppnhp

Protein crystallography data

The structure of The Crystal Structure of Chlamydomonas Reinhardtii ARL3 Bound to Gppnhp, PDB code: 5de3 was solved by K.Gotthardt, M.Lokaj, A.Wittinghofer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.56 / 1.42
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 41.840, 43.330, 80.850, 90.00, 90.00, 90.00
R / Rfree (%) 20.7 / 22.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Crystal Structure of Chlamydomonas Reinhardtii ARL3 Bound to Gppnhp (pdb code 5de3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Crystal Structure of Chlamydomonas Reinhardtii ARL3 Bound to Gppnhp, PDB code: 5de3:

Magnesium binding site 1 out of 1 in 5de3

Go back to Magnesium Binding Sites List in 5de3
Magnesium binding site 1 out of 1 in the The Crystal Structure of Chlamydomonas Reinhardtii ARL3 Bound to Gppnhp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of Chlamydomonas Reinhardtii ARL3 Bound to Gppnhp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg202

b:21.9
occ:1.00
O A:HOH332 2.0 27.7 1.0
O1G A:GNP201 2.0 26.1 1.0
O1B A:GNP201 2.0 22.3 1.0
OG1 A:THR30 2.1 22.4 1.0
O A:HOH311 2.2 22.6 1.0
OG1 A:THR47 2.3 22.3 1.0
PG A:GNP201 3.2 23.0 1.0
CB A:THR30 3.2 22.5 1.0
CB A:THR47 3.3 25.6 1.0
PB A:GNP201 3.3 20.7 1.0
N3B A:GNP201 3.5 22.9 1.0
O3G A:GNP201 3.7 26.8 1.0
N A:THR47 3.8 29.6 1.0
N A:THR30 4.0 21.8 1.0
O1A A:GNP201 4.1 27.7 1.0
CA A:THR47 4.1 28.9 1.0
CA A:THR30 4.2 22.2 1.0
O3A A:GNP201 4.2 21.5 1.0
OD2 A:ASP66 4.2 26.6 1.0
CG2 A:THR30 4.3 26.4 1.0
O A:HOH306 4.3 34.4 1.0
OD1 A:ASP66 4.3 26.1 1.0
CG2 A:THR47 4.4 29.4 1.0
O2B A:GNP201 4.4 22.3 1.0
PA A:GNP201 4.4 24.1 1.0
O2G A:GNP201 4.5 27.3 1.0
O2A A:GNP201 4.5 24.5 1.0
O A:THR45 4.6 31.4 1.0
CG A:ASP66 4.7 26.8 1.0
C A:PRO46 4.7 34.9 1.0
ND2 A:ASN51 4.9 32.0 1.0
CA A:PRO46 4.9 33.7 1.0
CB A:LYS29 5.0 18.7 1.0

Reference:

K.Gotthardt, M.Lokaj, A.Wittinghofer. The Crystal Structure of Chlamydomonas Reinhardtii ARL3 Bound to Gppnhp To Be Published.
Page generated: Sun Sep 29 02:42:26 2024

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