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Magnesium in PDB 5e0o: Brugia Malayi Trehalose-6 Phosphate Phosphatase in Complex with Peg at the Active Site.

Enzymatic activity of Brugia Malayi Trehalose-6 Phosphate Phosphatase in Complex with Peg at the Active Site.

All present enzymatic activity of Brugia Malayi Trehalose-6 Phosphate Phosphatase in Complex with Peg at the Active Site.:
3.1.3.12;

Protein crystallography data

The structure of Brugia Malayi Trehalose-6 Phosphate Phosphatase in Complex with Peg at the Active Site., PDB code: 5e0o was solved by A.Agarwal, S.Misra-Bhattacharya, R.Ravishankar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.86 / 3.00
Space group P 64 2 2
Cell size a, b, c (Å), α, β, γ (°) 167.931, 167.931, 102.956, 90.00, 90.00, 120.00
R / Rfree (%) 21.8 / 25.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Brugia Malayi Trehalose-6 Phosphate Phosphatase in Complex with Peg at the Active Site. (pdb code 5e0o). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Brugia Malayi Trehalose-6 Phosphate Phosphatase in Complex with Peg at the Active Site., PDB code: 5e0o:

Magnesium binding site 1 out of 1 in 5e0o

Go back to Magnesium Binding Sites List in 5e0o
Magnesium binding site 1 out of 1 in the Brugia Malayi Trehalose-6 Phosphate Phosphatase in Complex with Peg at the Active Site.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Brugia Malayi Trehalose-6 Phosphate Phosphatase in Complex with Peg at the Active Site. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg501

b:22.7
occ:1.00
O A:HOH602 2.0 16.0 1.0
OD1 A:ASP424 2.1 41.7 1.0
OD2 A:ASP213 2.3 20.5 1.0
CG A:ASP213 2.8 20.1 1.0
OD1 A:ASP213 3.0 42.0 1.0
CG A:ASP424 3.0 24.6 1.0
OD2 A:ASP428 3.2 33.2 1.0
O A:ASP215 3.2 30.5 1.0
OD2 A:ASP424 3.3 24.4 1.0
O1 A:PEG503 3.3 48.1 1.0
O4 A:PEG503 3.3 44.7 1.0
OG1 A:THR425 3.4 48.0 1.0
OD1 A:ASP428 3.8 32.1 1.0
CG A:ASP428 3.9 41.4 1.0
CB A:ASP213 4.0 19.4 1.0
CG2 A:THR425 4.0 24.3 1.0
NZ A:LYS398 4.0 41.5 1.0
O2 A:PEG503 4.0 43.8 1.0
N A:THR425 4.2 40.6 1.0
OG1 A:THR217 4.2 19.9 1.0
CB A:THR425 4.3 24.4 1.0
C2 A:PEG503 4.3 49.8 1.0
C1 A:PEG503 4.4 48.8 1.0
CB A:ASP424 4.4 24.9 1.0
C A:ASP215 4.4 30.0 1.0
N A:ASP424 4.5 25.0 1.0
C4 A:PEG503 4.5 46.8 1.0
C3 A:PEG503 4.6 47.5 1.0
OH A:TYR221 4.7 46.1 1.0
CA A:ASP424 4.8 29.6 1.0
CA A:THR425 4.9 24.7 1.0
C A:ASP424 4.9 44.8 1.0

Reference:

A.Agarwal, S.Misra-Bhattacharya, R.Ravishankar. Brugia Malayi Trehalose Phosphate Phosphatase in Complex with Peg at the Active Site To Be Published 2015.
Page generated: Sun Sep 29 03:27:08 2024

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