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Magnesium in PDB 5eba: Crystal Structure of Aromatic Mutant (Y343A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27

Enzymatic activity of Crystal Structure of Aromatic Mutant (Y343A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27

All present enzymatic activity of Crystal Structure of Aromatic Mutant (Y343A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27:
3.2.1.8;

Protein crystallography data

The structure of Crystal Structure of Aromatic Mutant (Y343A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27, PDB code: 5eba was solved by P.Mahanta, A.Bhardwaj, V.S.Reddy, S.Ramakumar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 64.53 / 2.30
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 73.860, 80.110, 69.210, 90.00, 111.19, 90.00
R / Rfree (%) 17.8 / 23.5

Other elements in 5eba:

The structure of Crystal Structure of Aromatic Mutant (Y343A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 also contains other interesting chemical elements:

Sodium (Na) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Aromatic Mutant (Y343A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 (pdb code 5eba). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Aromatic Mutant (Y343A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27, PDB code: 5eba:

Magnesium binding site 1 out of 1 in 5eba

Go back to Magnesium Binding Sites List in 5eba
Magnesium binding site 1 out of 1 in the Crystal Structure of Aromatic Mutant (Y343A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Aromatic Mutant (Y343A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:9.9
occ:1.00
 O A:ARG351 2.2 21.2 1.0
O A:HOH575 2.2 23.2 1.0
O A:HOH600 2.3 21.0 1.0
OD1 A:ASN292 2.3 26.7 1.0
O A:HOH520 2.4 19.7 1.0
OD1 A:ASP354 2.4 28.6 1.0
O A:HOH540 2.5 22.9 1.0
C A:ARG351 3.3 21.6 1.0
CG A:ASP354 3.4 28.2 1.0
CG A:ASN292 3.5 26.9 1.0
OD2 A:ASP354 3.7 28.4 1.0
CB A:ASN292 4.2 26.1 1.0
CA A:ARG351 4.2 22.0 1.0
N A:ILE352 4.2 21.1 1.0
CA A:ILE352 4.3 21.3 1.0
O A:HOH564 4.3 20.2 1.0
CA A:ASN292 4.3 26.2 1.0
OE2 A:GLU296 4.4 30.4 1.0
O A:ASP354 4.5 27.2 1.0
O A:ASN292 4.5 27.6 1.0
ND2 A:ASN292 4.5 27.2 1.0
O A:HOH574 4.5 32.1 1.0
C A:ASP354 4.6 28.0 1.0
CB A:ARG351 4.7 22.1 1.0
CG A:GLU296 4.8 28.7 1.0
CB A:ASP354 4.8 28.0 1.0
C A:ASN292 4.9 27.0 1.0
C A:ILE352 4.9 22.2 1.0
OXT A:ASP354 4.9 30.2 1.0
N A:ASP354 4.9 26.4 1.0

Reference:

P.Mahanta, A.Bhardwaj, V.S.Reddy, S.Ramakumar. Crystal Structure of Aromatic Mutant (Y343A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 To Be Published.
Page generated: Tue Aug 12 07:39:34 2025

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