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Magnesium in PDB 5eff: Crystal Structure of An Aromatic Mutant (F4A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27

Enzymatic activity of Crystal Structure of An Aromatic Mutant (F4A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27

All present enzymatic activity of Crystal Structure of An Aromatic Mutant (F4A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27:
3.2.1.8;

Protein crystallography data

The structure of Crystal Structure of An Aromatic Mutant (F4A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27, PDB code: 5eff was solved by P.Mahanta, A.Bhardwaj, V.S.Reddy, S.Ramakumar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 90.77 / 2.23
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 52.620, 67.710, 181.540, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 24

Other elements in 5eff:

The structure of Crystal Structure of An Aromatic Mutant (F4A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Sodium (Na) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of An Aromatic Mutant (F4A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 (pdb code 5eff). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of An Aromatic Mutant (F4A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27, PDB code: 5eff:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 5eff

Go back to Magnesium Binding Sites List in 5eff
Magnesium binding site 1 out of 2 in the Crystal Structure of An Aromatic Mutant (F4A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of An Aromatic Mutant (F4A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:13.7
occ:1.00
 O A:ARG351 2.1 13.9 1.0
OD1 A:ASN292 2.1 14.2 1.0
OD1 A:ASP354 2.7 25.8 1.0
C A:ARG351 3.3 12.9 1.0
CG A:ASN292 3.3 13.2 1.0
CG A:ASP354 3.6 22.9 1.0
OD2 A:ASP354 3.8 26.8 1.0
CA A:ARG351 4.2 12.8 1.0
ND2 A:ASN292 4.2 14.0 1.0
N A:ILE352 4.2 13.3 1.0
CB A:ASN292 4.3 12.6 1.0
CA A:ILE352 4.4 12.7 1.0
O A:HOH531 4.4 5.7 1.0
CA A:ASN292 4.5 11.8 1.0
O A:ASP354 4.5 17.7 1.0
O A:ASN292 4.6 11.6 1.0
CB A:ARG351 4.7 13.1 1.0
OE2 A:GLU296 4.9 17.5 1.0
CG A:GLU296 4.9 15.6 1.0
C A:ASP354 4.9 19.0 1.0
C A:ASN292 4.9 12.0 1.0
CB A:ASP354 5.0 21.1 1.0

Magnesium binding site 2 out of 2 in 5eff

Go back to Magnesium Binding Sites List in 5eff
Magnesium binding site 2 out of 2 in the Crystal Structure of An Aromatic Mutant (F4A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of An Aromatic Mutant (F4A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg401

b:8.3
occ:1.00
 O B:ARG351 2.2 7.2 1.0
OD1 B:ASP354 2.3 12.1 1.0
OD1 B:ASN292 2.4 18.9 1.0
O B:HOH502 2.6 27.7 1.0
O B:HOH528 2.7 14.7 1.0
O B:HOH514 2.8 27.7 1.0
C B:ARG351 3.3 7.2 1.0
CG B:ASP354 3.4 11.5 1.0
CG B:ASN292 3.5 18.6 1.0
OD2 B:ASP354 3.8 11.4 1.0
CB B:ASN292 4.1 17.8 1.0
CA B:ARG351 4.1 7.3 1.0
N B:ILE352 4.2 7.1 1.0
CA B:ILE352 4.3 7.2 1.0
CA B:ASN292 4.3 17.9 1.0
O B:HOH511 4.4 3.2 1.0
O B:ASP354 4.5 10.6 1.0
C B:ASP354 4.5 11.0 1.0
CG B:GLU296 4.6 10.8 1.0
O B:ASN292 4.6 18.9 1.0
ND2 B:ASN292 4.7 19.6 1.0
CB B:ARG351 4.7 7.8 1.0
OE2 B:GLU296 4.7 12.8 1.0
OXT B:ASP354 4.8 11.8 1.0
CB B:ASP354 4.8 10.8 1.0
C B:ASN292 4.9 17.8 1.0
C B:ILE352 4.9 7.3 1.0

Reference:

P.Mahanta, A.Bhardwaj, V.S.Reddy, S.Ramakumar. Crystal Structure of An Aromatic Mutant (F4A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 To Be Published.
Page generated: Tue Aug 12 07:43:57 2025

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