Magnesium in PDB 5eyf: Crystal Structure of Solute-Binding Protein From Enterococcus Faecium with Bound Glutamate

The structure of Crystal Structure of Solute-Binding Protein From Enterococcus Faecium with Bound Glutamate, PDB code: 5eyf was solved by N.Maltseva, Y.Kim, R.Mulligan, S.Shatsman, W.F.Anderson, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.57 / 1.52
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	36.405, 115.434, 53.825, 90.00, 101.93, 90.00
R / Rfree (%)	14.6 / 18.1

The structure of Crystal Structure of Solute-Binding Protein From Enterococcus Faecium with Bound Glutamate also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Magnesium atom in the Crystal Structure of Solute-Binding Protein From Enterococcus Faecium with Bound Glutamate (pdb code 5eyf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Solute-Binding Protein From Enterococcus Faecium with Bound Glutamate, PDB code: 5eyf:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Crystal Structure of Solute-Binding Protein From Enterococcus Faecium with Bound Glutamate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Solute-Binding Protein From Enterococcus Faecium with Bound Glutamate within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg302 b:15.4 occ:1.00 O B:HOH429 2.0 15.8 1.0 OD1 A:ASN223 2.1 16.0 1.0 O A:HOH478 2.1 18.0 1.0 O B:HOH491 2.1 16.7 1.0 OD1 B:ASN223 2.1 16.2 1.0 O A:HOH490 2.1 13.7 1.0 CG B:ASN223 3.2 16.2 1.0 CG A:ASN223 3.2 15.2 1.0 ND2 A:ASN223 4.0 17.8 1.0 CB B:ASN223 4.0 15.2 1.0 ND2 B:ASN223 4.1 18.5 1.0 CB A:ASN223 4.1 14.1 1.0 CA B:ASN223 4.2 13.9 1.0 O B:HOH421 4.3 17.1 1.0 O B:THR222 4.3 15.2 1.0 CA A:ASN223 4.3 11.2 1.0 O A:ALA131 4.3 12.1 1.0 O B:ALA131 4.4 14.5 1.0 O A:THR222 4.4 13.6 1.0 OD1 B:ASP130 4.4 16.4 0.8 OG1 B:THR220 4.5 20.1 1.0 O B:HOH403 4.5 33.6 1.0 OG1 A:THR220 4.6 18.2 1.0 N B:ASN223 4.9 14.3 1.0 C B:THR222 5.0 14.7 1.0 CG B:ASP130 5.0 15.6 0.8

Magnesium binding site 2 out of 3 in the Crystal Structure of Solute-Binding Protein From Enterococcus Faecium with Bound Glutamate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Solute-Binding Protein From Enterococcus Faecium with Bound Glutamate within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg302 b:19.2 occ:1.00 O B:HOH407 2.0 29.3 1.0 O B:HOH415 2.0 23.9 1.0 O A:HOH445 2.0 22.2 1.0 OE2 B:GLU271 2.1 20.4 0.5 O B:HOH541 2.1 32.8 1.0 OE1 B:GLU271 2.1 21.9 0.5 O B:HOH414 2.1 24.2 1.0 CD B:GLU271 3.1 19.0 0.5 CD B:GLU271 3.2 21.2 0.5 OE1 B:GLU271 3.5 17.6 0.5 OE2 B:GLU271 3.8 20.2 0.5 O A:HOH594 4.0 31.4 1.0 O B:LYS269 4.1 15.9 1.0 O B:HOH424 4.1 30.7 1.0 O B:HOH426 4.2 33.3 0.5 O A:ILE114 4.3 13.8 1.0 CG B:GLU271 4.3 19.4 0.5 CG B:GLU271 4.4 19.6 0.5 O B:THR266 4.4 21.7 1.0 O A:ASN223 4.4 13.8 1.0 OE1 B:GLU267 4.6 19.3 0.7 OE1 B:GLU267 4.7 22.9 0.3 O B:GLU267 4.7 19.0 0.3 O B:GLU267 4.7 19.0 0.7 CD A:PRO225 4.9 10.9 1.0 OE2 B:GLU267 4.9 28.5 0.7 CA B:GLU267 4.9 18.4 0.7 CA B:GLU267 5.0 19.9 0.3 CD B:GLU267 5.0 24.0 0.7

Magnesium binding site 3 out of 3 in the Crystal Structure of Solute-Binding Protein From Enterococcus Faecium with Bound Glutamate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Solute-Binding Protein From Enterococcus Faecium with Bound Glutamate within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg303 b:17.3 occ:0.76 CL B:CL304 2.0 46.3 1.0 O B:HOH448 2.0 22.8 1.0 OXT B:GLU271 2.1 20.4 0.5 O B:HOH411 2.1 22.4 1.0 O B:HOH427 2.1 24.0 1.0 O B:HOH523 2.1 28.1 1.0 OXT B:GLU271 2.1 20.4 0.5 C B:GLU271 3.0 20.4 0.5 C B:GLU271 3.1 20.6 0.5 CA B:GLU271 3.7 17.2 0.5 CA B:GLU271 3.8 17.5 0.5 O B:GLU271 3.9 21.3 0.5 O B:GLU271 4.0 22.6 0.5 ND1 B:HIS249 4.1 19.1 1.0 NZ A:LYS119 4.1 20.3 1.0 OD1 A:ASP116 4.2 21.1 1.0 OD2 B:ASP255 4.2 25.2 1.0 O B:HOH404 4.3 38.3 1.0 OD1 B:ASP255 4.3 26.3 1.0 O B:VAL270 4.3 16.8 1.0 O B:HIS249 4.3 25.2 1.0 O A:HOH473 4.5 30.6 0.6 CB B:GLU271 4.6 19.1 0.5 CB B:HIS249 4.6 19.9 1.0 CG B:ASP255 4.8 23.2 1.0 CB B:GLU271 4.8 18.2 0.5 CG B:HIS249 4.8 19.3 1.0 CD A:LYS119 4.9 18.1 1.0 N B:GLU271 4.9 15.7 0.5 N B:GLU271 4.9 15.6 0.5

N.Maltseva, Y.Kim, R.Mulligan, S.Shatsman, W.F.Anderson, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of Solute-Binding Protein From Enterococcus Faecium with Bound Glutamate To Be Published.