Magnesium in PDB 5fhe: Crystal Structure of Bacteroides PIF1 Bound to Ssdna

The structure of Crystal Structure of Bacteroides PIF1 Bound to Ssdna, PDB code: 5fhe was solved by X.Zhou, W.Ren, S.R.Bharath, H.Song, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.79 / 2.90
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	87.442, 87.442, 149.822, 90.00, 90.00, 120.00
R / Rfree (%)	22.3 / 27.7

The structure of Crystal Structure of Bacteroides PIF1 Bound to Ssdna also contains other interesting chemical elements:

Fluorine	(F)	4 atoms
Aluminium	(Al)	1 atom

The binding sites of Magnesium atom in the Crystal Structure of Bacteroides PIF1 Bound to Ssdna (pdb code 5fhe). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Bacteroides PIF1 Bound to Ssdna, PDB code: 5fhe:

Magnesium binding site 1 out of 1 in the Crystal Structure of Bacteroides PIF1 Bound to Ssdna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Bacteroides PIF1 Bound to Ssdna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:58.6 occ:1.00 OG1 A:THR35 1.8 0.1 1.0 F3 A:ALF503 2.0 66.2 1.0 O2B A:ADP501 2.6 71.8 1.0 OD2 A:ASP105 3.1 91.8 1.0 OE2 A:GLU106 3.1 78.9 1.0 CB A:THR35 3.2 0.5 1.0 OD1 A:ASP105 3.3 86.7 1.0 F2 A:ALF503 3.4 67.7 1.0 CG A:ASP105 3.5 85.8 1.0 AL A:ALF503 3.6 66.2 1.0 CD A:GLU106 3.7 78.9 1.0 PB A:ADP501 3.8 70.8 1.0 CG2 A:THR35 3.9 0.7 1.0 N A:THR35 3.9 88.6 1.0 CA A:THR35 4.0 93.2 1.0 CA A:GLY365 4.3 72.1 1.0 O3B A:ADP501 4.3 71.2 1.0 CG A:GLU106 4.3 76.4 1.0 CE A:LYS34 4.4 76.8 1.0 O1B A:ADP501 4.4 71.9 1.0 OE1 A:GLU106 4.5 80.8 1.0 F1 A:ALF503 4.5 66.2 1.0 O A:GLY365 4.7 67.0 1.0 CB A:LYS34 4.8 80.8 1.0 OD1 A:ASN61 4.9 67.1 1.0 NZ A:LYS34 4.9 75.9 1.0 O2A A:ADP501 5.0 75.7 1.0 C A:LYS34 5.0 85.4 1.0 CB A:ASP105 5.0 79.7 1.0

X.Zhou, W.Ren, S.R.Bharath, X.Tang, Y.He, C.Chen, Z.Liu, D.Li, H.Song. Structural and Functional Insights Into the Unwinding Mechanism of Bacteroides Sp PIF1 Cell Rep V. 14 2030 2016.
ISSN: ESSN 2211-1247
PubMed: 26904952
DOI: 10.1016/J.CELREP.2016.02.008