Magnesium in PDB 5fsc: Structure of Tectonin 2 From Laccaria Bicolor in Complex with Allyl- ALPHA_4-Methyl-Mannoside

The structure of Structure of Tectonin 2 From Laccaria Bicolor in Complex with Allyl- ALPHA_4-Methyl-Mannoside, PDB code: 5fsc was solved by R.Sommer, S.Bleuer, A.Titz, M.Kunzler, A.Varrot, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.77 / 1.95
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	69.007, 69.007, 348.953, 90.00, 90.00, 120.00
R / Rfree (%)	14.6 / 18.5

The binding sites of Magnesium atom in the Structure of Tectonin 2 From Laccaria Bicolor in Complex with Allyl- ALPHA_4-Methyl-Mannoside (pdb code 5fsc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Tectonin 2 From Laccaria Bicolor in Complex with Allyl- ALPHA_4-Methyl-Mannoside, PDB code: 5fsc:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of Tectonin 2 From Laccaria Bicolor in Complex with Allyl- ALPHA_4-Methyl-Mannoside


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Tectonin 2 From Laccaria Bicolor in Complex with Allyl- ALPHA_4-Methyl-Mannoside within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg299 b:9.5 occ:1.00 O A:HOH2047 2.1 4.8 1.0 O A:HOH2038 2.2 6.4 1.0 O A:HOH2034 2.2 9.3 1.0 O A:HOH2121 2.2 6.1 1.0 O A:HOH2215 2.2 6.0 1.0 O A:HOH2039 2.2 5.9 1.0 NH2 A:ARG12 3.8 7.8 0.5 O A:HOH2178 3.8 10.0 1.0 OD1 A:ASP203 4.0 3.6 1.0 NH2 A:ARG87 4.1 8.0 0.5 OD2 A:ASP203 4.1 3.8 1.0 OD1 A:ASP125 4.1 4.0 1.0 OD1 A:ASP50 4.2 3.9 1.0 OD2 A:ASP125 4.2 4.6 1.0 O A:ILE13 4.3 4.1 1.0 O A:ILE88 4.4 5.0 1.0 OD2 A:ASP50 4.4 4.5 1.0 O A:ILE126 4.4 3.4 1.0 O A:ILE166 4.5 4.1 1.0 O A:ILE204 4.5 3.9 1.0 CG A:ASP203 4.5 3.9 1.0 O A:ILE51 4.5 3.9 1.0 CG A:ASP125 4.6 4.3 1.0 CZ A:ARG12 4.7 7.7 0.5 CG A:ASP50 4.8 4.2 1.0 NE A:ARG12 4.8 7.4 0.5

Magnesium binding site 2 out of 2 in the Structure of Tectonin 2 From Laccaria Bicolor in Complex with Allyl- ALPHA_4-Methyl-Mannoside


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Tectonin 2 From Laccaria Bicolor in Complex with Allyl- ALPHA_4-Methyl-Mannoside within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg299 b:11.3 occ:0.33 O B:HOH2023 2.1 9.9 0.3 O B:HOH2088 2.1 9.9 0.3 O B:HOH2053 2.1 9.9 0.3 O B:HOH2024 2.2 8.0 0.3 O B:HOH2054 2.2 8.0 0.3 O B:HOH2112 2.2 8.0 0.3 NH2 B:ARG87 4.0 12.5 0.3 OD1 B:ASP125 4.0 6.0 0.3 OD1 B:ASP203 4.1 6.2 0.3 OD1 B:ASP50 4.1 6.1 0.3 OD2 B:ASP203 4.2 6.1 0.3 OD2 B:ASP125 4.2 6.0 0.3 OD2 B:ASP50 4.3 6.1 0.3 O B:ILE13 4.3 8.0 0.3 O B:ILE88 4.4 6.9 0.3 O B:ILE166 4.4 6.1 0.3 O B:ILE204 4.5 5.6 0.3 O B:ILE126 4.5 5.4 0.3 O B:ILE51 4.6 5.3 0.3 CG B:ASP203 4.6 6.1 0.3 CG B:ASP125 4.6 5.9 0.3 CG B:ASP50 4.7 6.0 0.3

R.Sommer, O.N.Makshakova, T.Wohlschlager, S.Hutin, M.Marsh, A.Titz, M.Kunzler, A.Varrot. Crystal Structures of Fungal Tectonin in Complex with O-Methylated Glycans Suggest Key Role in Innate Immune Defense. Structure V. 26 391 2018.
ISSN: ISSN 1878-4186
PubMed: 29398527
DOI: 10.1016/J.STR.2018.01.003