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Magnesium in PDB 5fui: Crystal Structure of the C-Terminal CBM6 of Lamc A Marine Laminarianse From Zobellia Galactanivorans

Protein crystallography data

The structure of Crystal Structure of the C-Terminal CBM6 of Lamc A Marine Laminarianse From Zobellia Galactanivorans, PDB code: 5fui was solved by A.Labourel, M.Jam, L.Legentil, B.Sylla, J.H.Hehemann, E.Ficko-Blean, V.Ferrieres, M.Czjzek, G.Michel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.71 / 1.40
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 78.056, 29.523, 51.872, 90.00, 115.79, 90.00
R / Rfree (%) 12.55 / 12.704

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the C-Terminal CBM6 of Lamc A Marine Laminarianse From Zobellia Galactanivorans (pdb code 5fui). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the C-Terminal CBM6 of Lamc A Marine Laminarianse From Zobellia Galactanivorans, PDB code: 5fui:

Magnesium binding site 1 out of 1 in 5fui

Go back to Magnesium Binding Sites List in 5fui
Magnesium binding site 1 out of 1 in the Crystal Structure of the C-Terminal CBM6 of Lamc A Marine Laminarianse From Zobellia Galactanivorans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the C-Terminal CBM6 of Lamc A Marine Laminarianse From Zobellia Galactanivorans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1386

b:10.9
occ:1.00
O A:GLU287 2.3 12.0 1.0
O A:HOH2015 2.3 30.2 1.0
OD1 A:ASN379 2.4 13.9 1.0
O A:ASN379 2.4 11.2 1.0
OE1 A:GLU269 2.4 15.3 1.0
OE1 A:GLU267 2.5 20.1 1.0
CD A:GLU269 3.2 15.4 1.0
C A:ASN379 3.3 9.5 1.0
OE2 A:GLU269 3.3 19.1 1.0
C A:GLU287 3.5 9.9 1.0
CG A:ASN379 3.5 12.9 1.0
CD A:GLU267 3.8 18.6 1.0
CA A:ASN379 3.8 9.0 1.0
N A:ALA268 4.2 11.4 1.0
CB A:GLU267 4.2 13.1 1.0
N A:GLU287 4.2 13.1 1.0
CB A:ASN379 4.2 9.8 1.0
N A:ASN288 4.4 9.7 1.0
CA A:ASN288 4.4 9.7 1.0
CA A:GLU287 4.5 11.8 1.0
CA A:GLU267 4.5 11.8 1.0
N A:TRP380 4.5 9.8 1.0
CG A:GLU267 4.5 16.4 1.0
ND2 A:ASN379 4.6 12.2 1.0
CG A:GLU269 4.7 14.7 1.0
C A:GLU267 4.7 12.2 1.0
OE2 A:GLU267 4.7 32.4 1.0
N A:GLU269 4.7 11.9 1.0
CB A:TRP380 4.8 10.7 1.0
O A:GLY285 4.8 14.5 1.0
CA A:TRP380 4.9 9.6 1.0
CD1 A:TRP380 4.9 10.4 1.0

Reference:

M.Jam, E.Ficko-Blean, A.Labourel, R.Larocque, M.Czjzek, G.Michel. Unraveling the Multivalent Binding of A Marine Family 6 Carbohydrate-Binding Module with Its Native Laminarin Ligand. Febs J. V. 283 1863 2016.
ISSN: ISSN 1742-464X
PubMed: 26959085
DOI: 10.1111/FEBS.13707
Page generated: Sun Sep 29 04:25:32 2024

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