Magnesium in PDB 5hoo: Crystal Structure of the MOS1 Strand Transfer Complex

The structure of Crystal Structure of the MOS1 Strand Transfer Complex, PDB code: 5hoo was solved by J.M.Richardson, E.R.Morris, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	60.01 / 3.30
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	256.340, 58.830, 110.140, 90.00, 94.91, 90.00
R / Rfree (%)	23.2 / 27.4

The binding sites of Magnesium atom in the Crystal Structure of the MOS1 Strand Transfer Complex (pdb code 5hoo). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the MOS1 Strand Transfer Complex, PDB code: 5hoo:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of the MOS1 Strand Transfer Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the MOS1 Strand Transfer Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:0.0 occ:1.00 O3' G:DC-1 2.2 99.3 1.0 OD1 A:ASP156 2.2 74.9 1.0 OD2 A:ASP249 2.2 74.1 1.0 O A:HOH501 2.2 0.0 1.0 CG A:ASP156 2.8 74.0 1.0 OD2 A:ASP156 2.9 73.0 1.0 CG A:ASP249 3.2 74.8 1.0 O A:GLU157 3.4 73.9 1.0 OD1 A:ASP249 3.4 75.9 1.0 C3' G:DC-1 3.5 98.8 1.0 OE1 A:GLU157 3.5 77.5 1.0 N A:GLU157 3.8 75.8 1.0 C4' G:DC-1 4.0 98.5 1.0 CB A:ASP156 4.2 74.4 1.0 C2' G:DC-1 4.2 98.0 1.0 C A:GLU157 4.3 74.7 1.0 OP2 F:DT0 4.4 99.7 1.0 CA A:GLU157 4.4 76.0 1.0 CB A:GLU157 4.5 77.0 1.0 CB A:ASP249 4.5 74.4 1.0 CD A:GLU157 4.6 78.3 1.0 CA A:ASP156 4.6 75.7 1.0 C A:ASP156 4.7 75.9 1.0 C5' G:DC-1 4.8 99.2 1.0 CE1 A:HIS254 4.9 78.4 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of the MOS1 Strand Transfer Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the MOS1 Strand Transfer Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:0.0 occ:1.00 O3' H:DC-1 2.2 0.0 1.0 OD1 B:ASP156 2.2 66.0 1.0 OD2 B:ASP249 2.2 65.3 1.0 O B:HOH501 2.2 0.0 1.0 CG B:ASP156 2.8 65.2 1.0 OD2 B:ASP156 2.8 64.4 1.0 CG B:ASP249 3.2 65.7 1.0 O B:GLU157 3.3 66.3 1.0 C3' H:DC-1 3.5 0.7 1.0 OD1 B:ASP249 3.5 66.6 1.0 OE1 B:GLU157 3.6 68.6 1.0 N B:GLU157 3.8 67.4 1.0 C2' H:DC-1 4.1 0.8 1.0 C4' H:DC-1 4.1 0.9 1.0 CB B:ASP156 4.1 65.5 1.0 C B:GLU157 4.3 67.2 1.0 CA B:GLU157 4.4 68.0 1.0 CB B:GLU157 4.5 69.0 1.0 CB B:ASP249 4.6 65.1 1.0 OP2 D:DT0 4.6 0.9 1.0 CA B:ASP156 4.6 66.7 1.0 CD B:GLU157 4.6 69.3 1.0 C B:ASP156 4.7 67.3 1.0 C5' H:DC-1 4.9 0.8 1.0 CE1 B:HIS254 5.0 68.7 1.0

E.R.Morris, H.Grey, G.Mckenzie, A.C.Jones, J.M.Richardson. A Bend, Flip and Trap Mechanism For Transposon Integration. Elife V. 5 2016.
ISSN: ESSN 2050-084X
PubMed: 27223327
DOI: 10.7554/ELIFE.15537