Magnesium in PDB 5hpz: Type II Water Soluble Chl Binding Proteins

The structure of Type II Water Soluble Chl Binding Proteins, PDB code: 5hpz was solved by D.Bednarczyk, O.Dym, V.Prabahard, D.Noy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	68.59 / 1.96
Space group	P 2 21 21
Cell size a, b, c (Å), α, β, γ (°)	38.920, 95.479, 98.610, 90.00, 90.00, 90.00
R / Rfree (%)	21 / 26.6

The binding sites of Magnesium atom in the Type II Water Soluble Chl Binding Proteins (pdb code 5hpz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Type II Water Soluble Chl Binding Proteins, PDB code: 5hpz:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Type II Water Soluble Chl Binding Proteins


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Type II Water Soluble Chl Binding Proteins within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1001 b:35.0 occ:1.00 MG A:68G1001 0.0 35.0 1.0 NB A:68G1001 2.0 27.1 1.0 ND A:68G1001 2.0 31.7 1.0 NC A:68G1001 2.0 34.6 1.0 NA A:68G1001 2.2 23.9 1.0 O A:PRO32 2.5 26.2 1.0 C1B A:68G1001 2.9 27.6 1.0 C4B A:68G1001 3.0 28.7 1.0 C1D A:68G1001 3.0 29.7 1.0 C4D A:68G1001 3.0 29.6 1.0 C1C A:68G1001 3.0 27.8 1.0 C4A A:68G1001 3.0 24.1 1.0 C4C A:68G1001 3.0 28.8 1.0 CHB A:68G1001 3.2 23.3 1.0 C1A A:68G1001 3.3 26.7 1.0 CHC A:68G1001 3.3 29.9 1.0 CHD A:68G1001 3.3 30.7 1.0 CHA A:68G1001 3.5 28.8 1.0 C A:PRO32 3.6 24.4 1.0 C9 B:68G1001 3.8 53.2 1.0 C2B A:68G1001 4.1 29.1 1.0 C3B A:68G1001 4.1 28.1 1.0 C2D A:68G1001 4.1 31.2 1.0 CA A:ALA33 4.1 25.9 1.0 C2C A:68G1001 4.2 33.1 1.0 C3D A:68G1001 4.2 32.3 1.0 C3C A:68G1001 4.2 30.0 1.0 C6 B:68G1001 4.3 51.4 1.0 N A:ALA33 4.3 23.4 1.0 C3A A:68G1001 4.3 26.1 1.0 C2A A:68G1001 4.5 27.1 1.0 CB A:ALA33 4.5 26.5 1.0 CA A:PRO32 4.6 25.5 1.0 CB A:PRO32 4.7 26.6 1.0 C8 B:68G1001 4.7 53.0 1.0 CED B:68G1001 4.7 31.3 1.0 CG2 A:VAL31 4.8 28.8 1.0 N A:PRO32 4.9 24.9 1.0 CBD A:68G1001 4.9 31.3 1.0 CD A:PRO32 5.0 25.6 1.0

Magnesium binding site 2 out of 2 in the Type II Water Soluble Chl Binding Proteins


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Type II Water Soluble Chl Binding Proteins within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1001 b:33.3 occ:1.00 MG B:68G1001 0.0 33.3 1.0 NB B:68G1001 2.0 25.7 1.0 ND B:68G1001 2.0 26.1 1.0 NC B:68G1001 2.2 25.4 1.0 NA B:68G1001 2.2 22.6 1.0 O B:PRO32 2.5 23.6 1.0 C1B B:68G1001 2.9 25.9 1.0 C4B B:68G1001 3.0 25.1 1.0 C4D B:68G1001 3.0 24.7 1.0 C1D B:68G1001 3.0 27.8 1.0 C4A B:68G1001 3.0 23.5 1.0 C1C B:68G1001 3.1 21.8 1.0 C4C B:68G1001 3.1 26.1 1.0 CHB B:68G1001 3.2 24.7 1.0 C1A B:68G1001 3.2 24.1 1.0 CHC B:68G1001 3.3 24.2 1.0 CHD B:68G1001 3.4 26.3 1.0 CHA B:68G1001 3.5 24.7 1.0 C B:PRO32 3.6 22.6 1.0 C9 A:68G1001 4.0 46.5 1.0 C2B B:68G1001 4.1 26.0 1.0 C3B B:68G1001 4.1 26.1 1.0 CA B:ALA33 4.1 26.4 1.0 C2D B:68G1001 4.1 26.9 1.0 C3D B:68G1001 4.2 27.1 1.0 C2C B:68G1001 4.2 27.3 1.0 C3C B:68G1001 4.3 26.7 1.0 N B:ALA33 4.3 23.9 1.0 C3A B:68G1001 4.3 23.7 1.0 C2A B:68G1001 4.4 25.1 1.0 C6 A:68G1001 4.4 48.5 1.0 CB B:ALA33 4.6 25.1 1.0 CED A:68G1001 4.6 34.2 1.0 CA B:PRO32 4.7 23.3 1.0 CB B:PRO32 4.7 24.5 1.0 N B:PRO32 4.8 25.0 1.0 CG2 B:VAL31 4.8 26.0 1.0 C8 A:68G1001 4.9 47.5 1.0 CBD B:68G1001 4.9 28.2 1.0 CD B:PRO32 5.0 23.9 1.0

D.Bednarczyk, O.Dym, V.Prabahar, Y.Peleg, D.H.Pike, D.Noy. Fine Tuning of Chlorophyll Spectra By Protein-Induced Ring Deformation. Angew.Chem.Int.Ed.Engl. V. 55 6901 2016.
ISSN: ESSN 1521-3773
PubMed: 27098554
DOI: 10.1002/ANIE.201512001