Magnesium in PDB 5hv1: Rifampin Phosphotransferase in Complex with Amppnp and Rifampin From Listeria Monocytogenes

The structure of Rifampin Phosphotransferase in Complex with Amppnp and Rifampin From Listeria Monocytogenes, PDB code: 5hv1 was solved by P.Zhang, X.Qi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.02 / 3.10
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	151.090, 151.090, 191.648, 90.00, 90.00, 120.00
R / Rfree (%)	25 / 28.6

The binding sites of Magnesium atom in the Rifampin Phosphotransferase in Complex with Amppnp and Rifampin From Listeria Monocytogenes (pdb code 5hv1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Rifampin Phosphotransferase in Complex with Amppnp and Rifampin From Listeria Monocytogenes, PDB code: 5hv1:

Magnesium binding site 1 out of 1 in the Rifampin Phosphotransferase in Complex with Amppnp and Rifampin From Listeria Monocytogenes


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Rifampin Phosphotransferase in Complex with Amppnp and Rifampin From Listeria Monocytogenes within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg903 b:0.4 occ:1.00 O1G A:ANP901 2.0 0.3 1.0 O1B A:ANP901 2.1 0.8 1.0 OE1 A:GLN309 2.3 0.7 1.0 O3A A:ANP901 2.6 0.0 1.0 PB A:ANP901 2.8 0.2 1.0 CD A:GLN309 2.9 96.0 1.0 NE2 A:GLN309 3.0 96.2 1.0 PG A:ANP901 3.2 0.4 1.0 NH2 A:ARG311 3.4 0.2 1.0 OE2 A:GLU297 3.5 0.4 1.0 N3B A:ANP901 3.6 0.3 1.0 NH1 A:ARG311 3.6 0.1 1.0 PA A:ANP901 3.8 0.5 1.0 CZ A:ARG311 3.8 0.8 1.0 O5' A:ANP901 3.8 0.1 1.0 O2G A:ANP901 4.2 0.6 1.0 O2B A:ANP901 4.2 0.6 1.0 O1A A:ANP901 4.3 0.4 1.0 O3G A:ANP901 4.3 0.8 1.0 CG A:GLN309 4.4 89.0 1.0 CD A:GLU297 4.5 0.7 1.0 O3' A:ANP901 4.6 100.0 1.0 CE A:LYS22 4.7 0.8 1.0 OE1 A:GLU297 4.8 0.5 1.0 C3' A:ANP901 4.9 0.9 1.0 O2A A:ANP901 4.9 0.9 1.0 NE A:ARG311 4.9 91.8 1.0 NZ A:LYS22 4.9 0.1 1.0 CB A:GLN309 5.0 92.5 1.0

X.Qi, W.Lin, M.Ma, C.Wang, Y.He, N.He, J.Gao, H.Zhou, Y.Xiao, Y.Wang, P.Zhang. Structural Basis of Rifampin Inactivation By Rifampin Phosphotransferase Proc.Natl.Acad.Sci.Usa V. 113 3803 2016.
ISSN: ESSN 1091-6490
PubMed: 27001859
DOI: 10.1073/PNAS.1523614113