Magnesium in PDB 5ido: Rna Editing Tutase 1 From Trypanosoma Brucei in Complex with Utp

The structure of Rna Editing Tutase 1 From Trypanosoma Brucei in Complex with Utp, PDB code: 5ido was solved by S.Thore, L.T.Rajappa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.73 / 2.20
Space group	P 21 2 21
Cell size a, b, c (Å), α, β, γ (°)	59.350, 66.340, 128.910, 90.00, 90.00, 90.00
R / Rfree (%)	24.8 / 28.8

The structure of Rna Editing Tutase 1 From Trypanosoma Brucei in Complex with Utp also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Magnesium atom in the Rna Editing Tutase 1 From Trypanosoma Brucei in Complex with Utp (pdb code 5ido). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Rna Editing Tutase 1 From Trypanosoma Brucei in Complex with Utp, PDB code: 5ido:

Magnesium binding site 1 out of 1 in the Rna Editing Tutase 1 From Trypanosoma Brucei in Complex with Utp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Rna Editing Tutase 1 From Trypanosoma Brucei in Complex with Utp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg703 b:49.1 occ:1.00 O1G A:UTP701 2.0 48.3 1.0 O A:HOH952 2.0 54.3 1.0 O2A A:UTP701 2.1 41.0 1.0 O A:HOH949 2.2 34.5 1.0 O1B A:UTP701 2.4 41.2 1.0 O A:HOH936 2.5 46.6 1.0 PG A:UTP701 3.4 46.6 1.0 PA A:UTP701 3.5 44.8 1.0 PB A:UTP701 3.5 40.2 1.0 O3B A:UTP701 3.9 46.0 1.0 O3A A:UTP701 3.9 54.4 1.0 C5' A:UTP701 4.1 52.5 1.0 O3G A:UTP701 4.3 50.6 1.0 O A:HOH953 4.3 49.1 1.0 O5' A:UTP701 4.4 53.7 1.0 O2G A:UTP701 4.5 38.6 1.0 O1A A:UTP701 4.6 46.8 1.0 O A:HOH819 4.7 40.6 1.0 OD2 A:ASP312 4.8 50.4 1.0 O2B A:UTP701 4.9 41.5 1.0 O A:HOH895 4.9 39.6 1.0

L.Rajappa-Titu, T.Suematsu, P.Munoz-Tello, M.Long, O.Demir, K.J.Cheng, J.R.Stagno, H.Luecke, R.E.Amaro, I.Aphasizheva, R.Aphasizhev, S.Thore. Rna Editing Tutase 1: Structural Foundation of Substrate Recognition, Complex Interactions and Drug Targeting. Nucleic Acids Res. V. 44 10862 2016.
ISSN: ESSN 1362-4962
PubMed: 27744351
DOI: 10.1093/NAR/GKW917