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Magnesium in PDB 5jlp: Crystal Structure of Mycobacterium Avium SERB2 in Complex with Serine at Act Domain

Enzymatic activity of Crystal Structure of Mycobacterium Avium SERB2 in Complex with Serine at Act Domain

All present enzymatic activity of Crystal Structure of Mycobacterium Avium SERB2 in Complex with Serine at Act Domain:
3.1.3.3;

Protein crystallography data

The structure of Crystal Structure of Mycobacterium Avium SERB2 in Complex with Serine at Act Domain, PDB code: 5jlp was solved by S.Shree, R.Ramachandran, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.24 / 2.50
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 64.548, 109.535, 134.434, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 26.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Mycobacterium Avium SERB2 in Complex with Serine at Act Domain (pdb code 5jlp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Mycobacterium Avium SERB2 in Complex with Serine at Act Domain, PDB code: 5jlp:

Magnesium binding site 1 out of 1 in 5jlp

Go back to Magnesium Binding Sites List in 5jlp
Magnesium binding site 1 out of 1 in the Crystal Structure of Mycobacterium Avium SERB2 in Complex with Serine at Act Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Mycobacterium Avium SERB2 in Complex with Serine at Act Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg503

b:78.8
occ:1.00
OD1 A:ASP343 2.2 77.5 1.0
OD2 A:ASP187 2.3 64.5 1.0
O A:HOH611 2.3 67.4 1.0
OD2 A:ASP347 3.0 69.7 1.0
CG A:ASP187 3.0 70.3 1.0
CG A:ASP343 3.3 73.1 1.0
OD1 A:ASP187 3.4 67.3 1.0
O A:ASP189 3.4 78.9 1.0
N A:GLY344 3.7 68.2 1.0
OD2 A:ASP343 3.9 68.8 1.0
CG A:ASP347 4.0 67.1 1.0
N A:ASP343 4.2 73.7 1.0
CB A:ASP187 4.2 66.3 1.0
O A:HOH603 4.2 54.5 1.0
OD1 A:ASP347 4.2 60.7 1.0
CA A:GLY344 4.3 59.8 1.0
O A:HOH601 4.4 66.8 1.0
CB A:ASP343 4.5 72.5 1.0
C A:ASP343 4.5 71.9 1.0
C A:ASP189 4.5 79.7 1.0
CA A:ASP343 4.6 70.3 1.0
ND2 A:ASN346 4.6 82.8 1.0
CB A:ASN346 4.7 80.3 1.0
NZ A:LYS320 4.8 69.8 1.0
OG1 A:THR191 4.8 63.3 1.0

Reference:

S.Shree, R.Ramachandran. Crystal Structure of Mycobacterium Avium SERB2 in Complex with Serine at Act Domain To Be Published.
Page generated: Sun Sep 29 17:50:54 2024

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