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Magnesium in PDB 5jlr: Crystal Structure of Mycobacterium Avium SERB2 with Serine Present at Slightly Different Position Near Act Domain

Enzymatic activity of Crystal Structure of Mycobacterium Avium SERB2 with Serine Present at Slightly Different Position Near Act Domain

All present enzymatic activity of Crystal Structure of Mycobacterium Avium SERB2 with Serine Present at Slightly Different Position Near Act Domain:
3.1.3.3;

Protein crystallography data

The structure of Crystal Structure of Mycobacterium Avium SERB2 with Serine Present at Slightly Different Position Near Act Domain, PDB code: 5jlr was solved by S.Shree, A.Agrawal, S.Dubey, R.Ramachandran, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.20 / 2.26
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 67.498, 107.805, 133.743, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 25.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Mycobacterium Avium SERB2 with Serine Present at Slightly Different Position Near Act Domain (pdb code 5jlr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Mycobacterium Avium SERB2 with Serine Present at Slightly Different Position Near Act Domain, PDB code: 5jlr:

Magnesium binding site 1 out of 1 in 5jlr

Go back to Magnesium Binding Sites List in 5jlr
Magnesium binding site 1 out of 1 in the Crystal Structure of Mycobacterium Avium SERB2 with Serine Present at Slightly Different Position Near Act Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Mycobacterium Avium SERB2 with Serine Present at Slightly Different Position Near Act Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg501

b:44.5
occ:1.00
 O A:HOH612 2.0 45.8 1.0
OD1 A:ASP343 2.0 54.9 1.0
O A:HOH639 2.0 46.5 1.0
O A:HOH633 2.1 46.2 1.0
OD2 A:ASP187 2.2 46.8 1.0
O A:ASP189 2.3 43.1 1.0
CG A:ASP343 3.0 48.4 1.0
CG A:ASP187 3.1 48.5 1.0
OD2 A:ASP343 3.3 44.9 1.0
C A:ASP189 3.4 43.3 1.0
OD1 A:ASP187 3.6 46.8 1.0
CA A:ASP189 4.1 50.5 1.0
OE2 A:GLU196 4.1 47.5 1.0
CB A:ASP189 4.1 44.9 1.0
OD2 A:ASP347 4.2 46.7 1.0
OG1 A:THR191 4.3 39.8 1.0
N A:ASP189 4.3 49.7 1.0
CB A:ASP343 4.3 45.5 1.0
CB A:ASP187 4.4 41.6 1.0
CB A:SER190 4.4 44.8 1.0
N A:SER190 4.5 43.6 1.0
SD A:MET219 4.5 65.8 1.0
N A:ASP343 4.6 41.2 1.0
N A:GLY344 4.6 57.2 1.0
CA A:SER190 4.8 49.0 1.0
CA A:ASP343 4.8 52.5 1.0
C A:ASP343 4.9 52.5 1.0
N A:THR191 5.0 43.7 1.0
C A:SER190 5.0 51.0 1.0
OE1 A:GLU196 5.0 50.7 1.0
CD A:GLU196 5.0 51.9 1.0

Reference:

S.Shree, R.Ramachandran. Crystal Structure of Mycobacterium Avium SERB2 with Serine Present at Slightly Different Position Near Act Domain To Be Published.
Page generated: Tue Aug 12 12:18:35 2025

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