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Magnesium in PDB 5jma: Crystal Structure of Mycobacterium Avium SERB2 in Complex with Serine at Catalytic (Psp) Domain

Enzymatic activity of Crystal Structure of Mycobacterium Avium SERB2 in Complex with Serine at Catalytic (Psp) Domain

All present enzymatic activity of Crystal Structure of Mycobacterium Avium SERB2 in Complex with Serine at Catalytic (Psp) Domain:
3.1.3.3;

Protein crystallography data

The structure of Crystal Structure of Mycobacterium Avium SERB2 in Complex with Serine at Catalytic (Psp) Domain, PDB code: 5jma was solved by S.Shree, S.Dubey, A.Agrawal, R.Ramachandran, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.56 / 2.03
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 63.968, 109.645, 134.246, 90.00, 90.00, 90.00
R / Rfree (%) 21 / 25.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Mycobacterium Avium SERB2 in Complex with Serine at Catalytic (Psp) Domain (pdb code 5jma). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Mycobacterium Avium SERB2 in Complex with Serine at Catalytic (Psp) Domain, PDB code: 5jma:

Magnesium binding site 1 out of 1 in 5jma

Go back to Magnesium Binding Sites List in 5jma
Magnesium binding site 1 out of 1 in the Crystal Structure of Mycobacterium Avium SERB2 in Complex with Serine at Catalytic (Psp) Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Mycobacterium Avium SERB2 in Complex with Serine at Catalytic (Psp) Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:39.3
occ:1.00
 O A:ASP189 2.0 30.5 1.0
O A:HOH615 2.1 44.2 1.0
OD1 A:ASP343 2.1 39.1 1.0
O A:HOH607 2.1 35.1 1.0
OD2 A:ASP187 2.1 41.1 1.0
O A:HOH649 2.2 38.7 1.0
CG A:ASP343 3.0 41.1 1.0
CG A:ASP187 3.1 44.7 1.0
C A:ASP189 3.2 35.1 1.0
OD2 A:ASP343 3.3 44.2 1.0
OD1 A:ASP187 3.5 47.6 1.0
CB A:ASP189 3.9 34.4 1.0
CA A:ASP189 4.0 35.2 1.0
OE2 A:GLU196 4.1 39.0 1.0
O A:HOH601 4.1 41.1 1.0
OD2 A:ASP347 4.1 49.2 1.0
N A:ASP189 4.2 31.9 1.0
CB A:SER190 4.3 38.9 1.0
N A:SER190 4.3 37.4 1.0
OG1 A:THR191 4.3 39.9 1.0
CB A:ASP343 4.4 34.0 1.0
CB A:ASP187 4.4 40.3 1.0
N A:GLY344 4.6 39.3 1.0
SD A:MET219 4.6 55.7 1.0
N A:ASP343 4.6 37.0 1.0
CA A:SER190 4.6 41.2 1.0
C A:SER190 4.7 42.0 1.0
N A:THR191 4.8 39.2 1.0
CA A:ASP343 4.9 32.5 1.0
CD A:GLU196 5.0 39.6 1.0
OG A:SER190 5.0 40.1 1.0
C A:VAL188 5.0 35.2 1.0
OE1 A:GLU196 5.0 38.8 1.0

Reference:

S.Shree, R.Ramachandran. Crystal Structure of Mycobacterium Avium SERB2 in Complex with Serine at Catalytic (Psp) Domain To Be Published.
Page generated: Tue Aug 12 12:18:47 2025

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