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Magnesium in PDB 5kai: NH3-Bound Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 2.8 A Resolution

Enzymatic activity of NH3-Bound Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 2.8 A Resolution

All present enzymatic activity of NH3-Bound Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 2.8 A Resolution:
1.10.3.9;

Protein crystallography data

The structure of NH3-Bound Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 2.8 A Resolution, PDB code: 5kai was solved by I.D.Young, M.Ibrahim, R.Chatterjee, S.Gul, S.Koroidov, A.S.Brewster, R.Tran, R.Alonso-Mori, F.Fuller, T.Kroll, T.Michels-Clark, H.Laksmono, R.G.Sierra, C.A.Stan, C.Saracini, M.A.Bean, I.Seuffert, D.Sokaras, T.-C.Weng, M.S.Hunter, A.Aquila, J.E.Koglin, J.Robinson, M.Liang, S.Boutet, A.Y.Lyubimov, M.Uervirojnangkoorn, N.W.Moriarty, D.Liebschner, P.V.Afonine, D.G.Waterman, G.Evans, H.Dobbek, W.I.Weis, A.T.Brunger, P.H.Zwart, P.D.Adams, A.Zouni, J.Messinger, U.Bergmann, N.K.Sauter, J.Kern, V.K.Yachandra, J.Yano, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.57 / 2.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 117.911, 224.268, 330.996, 90.00, 90.00, 90.00
R / Rfree (%) 25 / 30

Other elements in 5kai:

The structure of NH3-Bound Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 2.8 A Resolution also contains other interesting chemical elements:

Manganese (Mn) 8 atoms
Iron (Fe) 6 atoms
Calcium (Ca) 2 atoms
Chlorine (Cl) 4 atoms

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70;

Binding sites:

The binding sites of Magnesium atom in the NH3-Bound Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 2.8 A Resolution (pdb code 5kai). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 70 binding sites of Magnesium where determined in the NH3-Bound Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 2.8 A Resolution, PDB code: 5kai:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 70 in 5kai

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Magnesium binding site 1 out of 70 in the NH3-Bound Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 2.8 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of NH3-Bound Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 2.8 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg606

b:44.4
occ:1.00
MG A:CLA606 0.0 44.4 1.0
ND A:CLA606 2.0 43.5 1.0
NB A:CLA606 2.1 47.4 1.0
NC A:CLA606 2.1 43.7 1.0
NA A:CLA606 2.1 41.4 1.0
NE2 A:HIS198 2.2 42.4 1.0
C4D A:CLA606 2.9 45.0 1.0
CE1 A:HIS198 2.9 46.3 1.0
C4A A:CLA606 3.0 46.6 1.0
C1B A:CLA606 3.0 45.3 1.0
C1C A:CLA606 3.1 37.4 1.0
C4B A:CLA606 3.1 35.6 1.0
C4C A:CLA606 3.1 45.9 1.0
C1A A:CLA606 3.1 45.0 1.0
C1D A:CLA606 3.2 43.6 1.0
CD2 A:HIS198 3.4 44.8 1.0
CHB A:CLA606 3.4 46.9 1.0
CHC A:CLA606 3.5 36.7 1.0
CHA A:CLA606 3.5 47.5 1.0
CHD A:CLA606 3.5 43.6 1.0
CE A:MET183 3.9 37.3 1.0
ND1 A:HIS198 4.2 44.4 1.0
C3D A:CLA606 4.3 47.5 1.0
C2B A:CLA606 4.3 42.6 1.0
C2C A:CLA606 4.3 40.2 1.0
C3B A:CLA606 4.3 38.5 1.0
C2D A:CLA606 4.4 48.4 1.0
C3C A:CLA606 4.4 42.7 1.0
CG A:HIS198 4.4 44.1 1.0
C3A A:CLA606 4.4 38.3 1.0
C2A A:CLA606 4.4 45.2 1.0
CAB D:CLA403 4.5 44.3 1.0
CBD A:CLA606 4.9 47.0 1.0

Magnesium binding site 2 out of 70 in 5kai

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Magnesium binding site 2 out of 70 in the NH3-Bound Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 2.8 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of NH3-Bound Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 2.8 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg607

b:31.6
occ:1.00
MG A:CLA607 0.0 31.6 1.0
ND A:CLA607 2.0 46.7 1.0
NB A:CLA607 2.0 42.9 1.0
NC A:CLA607 2.1 43.9 1.0
NA A:CLA607 2.1 43.0 1.0
O A:HOH712 2.1 38.2 1.0
C4D A:CLA607 2.9 45.8 1.0
C1B A:CLA607 3.0 47.0 1.0
C4A A:CLA607 3.0 43.6 1.0
C1C A:CLA607 3.1 49.0 1.0
C4B A:CLA607 3.1 42.3 1.0
C4C A:CLA607 3.1 44.9 1.0
C1A A:CLA607 3.1 44.9 1.0
C1D A:CLA607 3.2 43.9 1.0
CHB A:CLA607 3.4 46.2 1.0
CHC A:CLA607 3.4 44.2 1.0
CHA A:CLA607 3.5 46.9 1.0
CHD A:CLA607 3.5 39.0 1.0
CBB D:PHO401 3.9 42.2 1.0
C3D A:CLA607 4.3 39.2 1.0
C2C A:CLA607 4.3 44.8 1.0
C2B A:CLA607 4.3 47.6 1.0
C3B A:CLA607 4.3 44.5 1.0
C3C A:CLA607 4.4 41.8 1.0
C2D A:CLA607 4.4 44.0 1.0
C3A A:CLA607 4.4 37.4 1.0
C2A A:CLA607 4.4 42.2 1.0
CBA A:CLA607 4.7 43.3 1.0
CG2 D:ILE178 4.9 38.0 1.0
CE2 A:PHE206 4.9 38.4 1.0
CBD A:CLA607 4.9 45.6 1.0

Magnesium binding site 3 out of 70 in 5kai

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Magnesium binding site 3 out of 70 in the NH3-Bound Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 2.8 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of NH3-Bound Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 2.8 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg609

b:39.8
occ:1.00
MG A:CLA609 0.0 39.8 1.0
ND A:CLA609 2.0 47.4 1.0
NB A:CLA609 2.0 40.0 1.0
NC A:CLA609 2.1 40.5 1.0
NA A:CLA609 2.1 42.3 1.0
NE2 A:HIS118 2.2 44.3 1.0
C4D A:CLA609 2.9 43.6 1.0
C1B A:CLA609 3.0 40.5 1.0
CE1 A:HIS118 3.0 41.4 1.0
C4A A:CLA609 3.0 42.3 1.0
C1C A:CLA609 3.1 42.0 1.0
C4B A:CLA609 3.1 34.6 1.0
C4C A:CLA609 3.1 45.0 1.0
C1A A:CLA609 3.1 39.0 1.0
C1D A:CLA609 3.2 41.3 1.0
CD2 A:HIS118 3.3 42.9 1.0
CHB A:CLA609 3.4 37.4 1.0
CHC A:CLA609 3.4 36.3 1.0
CHA A:CLA609 3.5 38.1 1.0
CHD A:CLA609 3.5 39.2 1.0
CG1 I:VAL8 4.1 43.2 1.0
ND1 A:HIS118 4.2 35.1 1.0
C3D A:CLA609 4.3 43.5 1.0
C2B A:CLA609 4.3 43.0 1.0
C3B A:CLA609 4.3 40.3 1.0
C2C A:CLA609 4.3 41.4 1.0
C3C A:CLA609 4.4 44.3 1.0
C2D A:CLA609 4.4 42.4 1.0
CG A:HIS118 4.4 40.8 1.0
C3A A:CLA609 4.4 45.6 1.0
C2A A:CLA609 4.4 45.3 1.0
CG2 I:VAL12 4.5 46.4 1.0
CBA A:CLA609 4.8 40.6 1.0
CBD A:CLA609 4.9 39.0 1.0

Magnesium binding site 4 out of 70 in 5kai

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Magnesium binding site 4 out of 70 in the NH3-Bound Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 2.8 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of NH3-Bound Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 2.8 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg602

b:61.5
occ:1.00
MG B:CLA602 0.0 61.5 1.0
ND B:CLA602 2.0 66.2 1.0
NB B:CLA602 2.0 62.2 1.0
NC B:CLA602 2.1 57.7 1.0
NA B:CLA602 2.1 60.1 1.0
O B:HOH705 2.2 57.2 1.0
C4D B:CLA602 2.9 68.8 1.0
C1B B:CLA602 3.0 60.3 1.0
C4A B:CLA602 3.0 64.1 1.0
C1C B:CLA602 3.1 58.0 1.0
C4B B:CLA602 3.1 65.7 1.0
C4C B:CLA602 3.1 59.1 1.0
C1A B:CLA602 3.1 65.2 1.0
C1D B:CLA602 3.2 66.8 1.0
CHB B:CLA602 3.4 61.0 1.0
CHC B:CLA602 3.4 56.5 1.0
CHA B:CLA602 3.5 67.3 1.0
CHD B:CLA602 3.5 62.5 1.0
C12 B:CLA602 3.9 52.5 1.0
C10 B:CLA602 4.0 58.5 1.0
C11 B:CLA602 4.0 57.8 1.0
C8 B:CLA602 4.0 62.4 1.0
C3D B:CLA602 4.3 71.1 1.0
C2B B:CLA602 4.3 57.5 1.0
C2C B:CLA602 4.3 61.7 1.0
C3B B:CLA602 4.3 64.9 1.0
C3C B:CLA602 4.3 63.8 1.0
O B:TRP185 4.4 55.5 1.0
C2D B:CLA602 4.4 65.4 1.0
C3A B:CLA602 4.4 60.7 1.0
C2A B:CLA602 4.5 62.9 1.0
C9 B:CLA602 4.6 62.5 1.0
CE2 B:PHE190 4.8 50.5 1.0
CBB B:CLA603 4.8 56.8 1.0
CBD B:CLA602 4.9 68.7 1.0
CBA B:CLA602 5.0 72.3 1.0

Magnesium binding site 5 out of 70 in 5kai

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Magnesium binding site 5 out of 70 in the NH3-Bound Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 2.8 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of NH3-Bound Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 2.8 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg603

b:55.9
occ:1.00
MG B:CLA603 0.0 55.9 1.0
ND B:CLA603 2.0 52.0 1.0
NB B:CLA603 2.0 51.2 1.0
NC B:CLA603 2.1 53.9 1.0
NA B:CLA603 2.1 53.4 1.0
ND1 B:HIS201 2.2 49.5 1.0
CE1 B:HIS201 2.7 50.4 1.0
C4D B:CLA603 2.9 48.8 1.0
C1B B:CLA603 3.0 52.7 1.0
C4A B:CLA603 3.0 54.5 1.0
C1C B:CLA603 3.1 54.6 1.0
C4B B:CLA603 3.1 52.6 1.0
C4C B:CLA603 3.1 52.2 1.0
C1A B:CLA603 3.1 52.0 1.0
C1D B:CLA603 3.2 54.3 1.0
CHB B:CLA603 3.4 51.4 1.0
CG B:HIS201 3.4 46.7 1.0
CHC B:CLA603 3.4 55.0 1.0
CHA B:CLA603 3.5 48.2 1.0
CHD B:CLA603 3.5 55.0 1.0
CZ H:PHE41 3.9 59.3 1.0
NE2 B:HIS201 3.9 46.3 1.0
CB B:HIS201 4.1 43.4 1.0
CE2 H:PHE41 4.3 61.9 1.0
C3D B:CLA603 4.3 47.7 1.0
C2B B:CLA603 4.3 51.8 1.0
CD2 B:HIS201 4.3 39.6 1.0
C3B B:CLA603 4.3 49.5 1.0
C2C B:CLA603 4.3 52.9 1.0
C3C B:CLA603 4.3 49.1 1.0
C2D B:CLA603 4.4 49.4 1.0
C3A B:CLA603 4.4 51.4 1.0
C2A B:CLA603 4.4 43.2 1.0
CA B:HIS201 4.8 50.4 1.0
CE1 B:PHE190 4.8 57.0 1.0
CBD B:CLA603 4.9 49.2 1.0

Magnesium binding site 6 out of 70 in 5kai

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Magnesium binding site 6 out of 70 in the NH3-Bound Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 2.8 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of NH3-Bound Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 2.8 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg604

b:49.3
occ:1.00
MG B:CLA604 0.0 49.3 1.0
ND B:CLA604 2.0 48.7 1.0
NB B:CLA604 2.0 42.1 1.0
NC B:CLA604 2.1 35.8 1.0
NA B:CLA604 2.1 41.5 1.0
NE2 B:HIS202 2.2 40.4 1.0
C4D B:CLA604 2.9 44.1 1.0
C1B B:CLA604 3.0 41.4 1.0
C4A B:CLA604 3.0 40.9 1.0
C1C B:CLA604 3.1 39.8 1.0
C4B B:CLA604 3.1 40.9 1.0
C4C B:CLA604 3.1 36.0 1.0
C1A B:CLA604 3.1 45.1 1.0
CE1 B:HIS202 3.2 39.3 1.0
C1D B:CLA604 3.2 42.5 1.0
CD2 B:HIS202 3.2 46.2 1.0
CHB B:CLA604 3.4 41.9 1.0
CHC B:CLA604 3.4 38.5 1.0
CHA B:CLA604 3.5 44.1 1.0
CHD B:CLA604 3.5 40.7 1.0
C3D B:CLA604 4.3 43.9 1.0
ND1 B:HIS202 4.3 37.1 1.0
C9 B:CLA606 4.3 46.4 1.0
C2B B:CLA604 4.3 39.2 1.0
C2C B:CLA604 4.3 41.7 1.0
CG B:HIS202 4.3 46.6 1.0
C3B B:CLA604 4.3 46.7 1.0
C3C B:CLA604 4.4 37.4 1.0
C2D B:CLA604 4.4 43.8 1.0
C3A B:CLA604 4.4 41.9 1.0
C2A B:CLA604 4.4 44.2 1.0
C5 B:CLA606 4.6 37.3 1.0
C4 B:CLA606 4.8 46.9 1.0
C6 B:CLA606 4.8 43.4 1.0
CBA B:CLA604 4.9 43.9 1.0
CBD B:CLA604 4.9 43.0 1.0
C3 B:CLA606 5.0 43.3 1.0

Magnesium binding site 7 out of 70 in 5kai

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Magnesium binding site 7 out of 70 in the NH3-Bound Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 2.8 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of NH3-Bound Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 2.8 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg605

b:49.1
occ:1.00
MG B:CLA605 0.0 49.1 1.0
ND B:CLA605 2.0 47.8 1.0
NB B:CLA605 2.0 44.8 1.0
NC B:CLA605 2.1 42.2 1.0
NA B:CLA605 2.1 48.3 1.0
NE2 B:HIS455 2.2 43.9 1.0
C4D B:CLA605 2.9 44.2 1.0
CE1 B:HIS455 3.0 47.6 1.0
C4A B:CLA605 3.0 48.9 1.0
C1B B:CLA605 3.1 48.1 1.0
C1C B:CLA605 3.1 41.8 1.0
C4B B:CLA605 3.1 41.2 1.0
C4C B:CLA605 3.1 40.9 1.0
C1D B:CLA605 3.2 51.4 1.0
C1A B:CLA605 3.2 47.4 1.0
CD2 B:HIS455 3.3 43.2 1.0
CHB B:CLA605 3.4 47.8 1.0
CHC B:CLA605 3.5 44.3 1.0
CHA B:CLA605 3.5 49.0 1.0
CHD B:CLA605 3.5 43.0 1.0
C14 B:CLA613 4.0 45.4 1.0
ND1 B:HIS455 4.2 39.3 1.0
C3D B:CLA605 4.3 48.5 1.0
C2C B:CLA605 4.3 43.8 1.0
CG B:HIS455 4.3 40.9 1.0
C2B B:CLA605 4.3 46.4 1.0
C3B B:CLA605 4.4 43.4 1.0
C3C B:CLA605 4.4 41.0 1.0
C2D B:CLA605 4.4 49.8 1.0
C3A B:CLA605 4.4 49.2 1.0
C2A B:CLA605 4.5 43.7 1.0
C15 B:CLA613 4.6 43.0 1.0
C13 B:CLA613 4.7 37.7 1.0
CBD B:CLA605 5.0 47.8 1.0

Magnesium binding site 8 out of 70 in 5kai

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Magnesium binding site 8 out of 70 in the NH3-Bound Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 2.8 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of NH3-Bound Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 2.8 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg606

b:43.2
occ:1.00
MG B:CLA606 0.0 43.2 1.0
ND B:CLA606 2.0 45.2 1.0
NB B:CLA606 2.0 43.8 1.0
NC B:CLA606 2.1 46.2 1.0
NA B:CLA606 2.1 42.8 1.0
NE2 B:HIS100 2.2 47.2 1.0
C4D B:CLA606 2.9 45.0 1.0
CE1 B:HIS100 3.0 41.8 1.0
C1B B:CLA606 3.0 41.4 1.0
C4A B:CLA606 3.1 42.5 1.0
C1C B:CLA606 3.1 45.1 1.0
C4B B:CLA606 3.1 43.5 1.0
C4C B:CLA606 3.1 43.0 1.0
C1A B:CLA606 3.1 45.7 1.0
C1D B:CLA606 3.2 47.1 1.0
CD2 B:HIS100 3.4 45.3 1.0
CHB B:CLA606 3.4 46.0 1.0
CHC B:CLA606 3.4 45.9 1.0
CHA B:CLA606 3.5 44.0 1.0
CHD B:CLA606 3.5 39.2 1.0
C2 B:CLA605 4.2 45.4 1.0
ND1 B:HIS100 4.2 36.6 1.0
C3D B:CLA606 4.3 45.7 1.0
C2B B:CLA606 4.3 41.3 1.0
C2C B:CLA606 4.3 45.3 1.0
C3B B:CLA606 4.3 40.4 1.0
C3C B:CLA606 4.3 48.0 1.0
C2D B:CLA606 4.4 45.0 1.0
CG B:HIS100 4.4 40.2 1.0
C3A B:CLA606 4.4 37.9 1.0
C2A B:CLA606 4.5 45.7 1.0
C1 B:CLA605 4.7 50.5 1.0
CBD B:CLA606 4.9 40.4 1.0
O2A B:CLA605 4.9 44.4 1.0
CBA B:CLA606 5.0 50.9 1.0

Magnesium binding site 9 out of 70 in 5kai

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Magnesium binding site 9 out of 70 in the NH3-Bound Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 2.8 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of NH3-Bound Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 2.8 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg607

b:54.5
occ:1.00
MG B:CLA607 0.0 54.5 1.0
ND B:CLA607 2.0 50.5 1.0
NB B:CLA607 2.0 55.1 1.0
NC B:CLA607 2.1 58.6 1.0
NA B:CLA607 2.1 51.3 1.0
ND1 B:HIS157 2.2 54.6 1.0
CE1 B:HIS157 2.5 55.1 1.0
C4D B:CLA607 2.9 49.4 1.0
C1B B:CLA607 3.0 53.4 1.0
C4A B:CLA607 3.1 49.5 1.0
C1C B:CLA607 3.1 53.7 1.0
C4B B:CLA607 3.1 50.1 1.0
C4C B:CLA607 3.1 50.5 1.0
C1D B:CLA607 3.2 51.6 1.0
C1A B:CLA607 3.2 51.0 1.0
CHB B:CLA607 3.4 47.9 1.0
CHC B:CLA607 3.5 48.5 1.0
CHA B:CLA607 3.5 50.9 1.0
CG B:HIS157 3.5 54.0 1.0
CHD B:CLA607 3.5 52.0 1.0
C5 B:UNL601 3.6 49.8 1.0
NE2 B:HIS157 3.8 47.6 1.0
C4 B:UNL601 4.0 49.9 1.0
C6 B:UNL601 4.1 49.3 1.0
C3D B:CLA607 4.3 47.9 1.0
CD2 B:HIS157 4.3 43.2 1.0
CB B:HIS157 4.3 47.2 1.0
C2B B:CLA607 4.3 50.9 1.0
C2C B:CLA607 4.3 52.5 1.0
C3B B:CLA607 4.3 52.0 1.0
C3C B:CLA607 4.4 49.4 1.0
C2D B:CLA607 4.4 49.3 1.0
C3A B:CLA607 4.4 51.0 1.0
C2A B:CLA607 4.5 47.5 1.0
C7 B:UNL601 4.5 50.1 1.0
CBD B:CLA607 4.9 48.1 1.0
CBA B:CLA607 5.0 47.0 1.0

Magnesium binding site 10 out of 70 in 5kai

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Magnesium binding site 10 out of 70 in the NH3-Bound Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 2.8 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of NH3-Bound Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 2.8 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg608

b:40.4
occ:1.00
MG B:CLA608 0.0 40.4 1.0
ND B:CLA608 2.0 42.3 1.0
NB B:CLA608 2.0 35.3 1.0
NC B:CLA608 2.1 40.0 1.0
NA B:CLA608 2.1 42.9 1.0
O B:HOH704 2.1 32.2 1.0
C4D B:CLA608 2.9 45.5 1.0
C1B B:CLA608 3.0 36.4 1.0
C4A B:CLA608 3.0 40.9 1.0
C1C B:CLA608 3.1 35.0 1.0
C4B B:CLA608 3.1 35.5 1.0
C4C B:CLA608 3.1 42.6 1.0
C1A B:CLA608 3.1 44.5 1.0
C1D B:CLA608 3.2 47.3 1.0
CHB B:CLA608 3.4 34.5 1.0
CHC B:CLA608 3.4 34.3 1.0
CHA B:CLA608 3.5 44.3 1.0
C12 M:LMG101 3.5 42.9 1.0
CHD B:CLA608 3.5 43.4 1.0
C14 M:LMG101 4.0 41.5 1.0
C3D B:CLA608 4.3 50.2 1.0
C2B B:CLA608 4.3 35.6 1.0
C2C B:CLA608 4.3 30.8 1.0
C3B B:CLA608 4.3 38.4 1.0
C3C B:CLA608 4.4 36.9 1.0
C2D B:CLA608 4.4 49.9 1.0
C3A B:CLA608 4.4 44.1 1.0
C13 M:LMG101 4.4 50.0 1.0
C2A B:CLA608 4.4 44.5 1.0
CE B:MET37 4.5 45.6 1.0
C11 M:LMG101 4.6 48.3 1.0
SD B:MET37 4.7 44.2 1.0
CBA B:CLA608 4.8 48.9 1.0
CD2 B:PHE61 4.9 43.7 1.0
CBD B:CLA608 4.9 47.3 1.0

Reference:

I.D.Young, M.Ibrahim, R.Chatterjee, S.Gul, F.D.Fuller, S.Koroidov, A.S.Brewster, R.Tran, R.Alonso-Mori, T.Kroll, T.Michels-Clark, H.Laksmono, R.G.Sierra, C.A.Stan, R.Hussein, M.Zhang, L.Douthit, M.Kubin, C.De Lichtenberg, L.Vo Pham, H.Nilsson, M.H.Cheah, D.Shevela, C.Saracini, M.A.Bean, I.Seuffert, D.Sokaras, T.C.Weng, E.Pastor, C.Weninger, T.Fransson, L.Lassalle, P.Brauer, P.Aller, P.T.Docker, B.Andi, A.M.Orville, J.M.Glownia, S.Nelson, M.Sikorski, D.Zhu, M.S.Hunter, T.J.Lane, A.Aquila, J.E.Koglin, J.Robinson, M.Liang, S.Boutet, A.Y.Lyubimov, M.Uervirojnangkoorn, N.W.Moriarty, D.Liebschner, P.V.Afonine, D.G.Waterman, G.Evans, P.Wernet, H.Dobbek, W.I.Weis, A.T.Brunger, P.H.Zwart, P.D.Adams, A.Zouni, J.Messinger, U.Bergmann, N.K.Sauter, J.Kern, V.K.Yachandra, J.Yano. Structure of Photosystem II and Substrate Binding at Room Temperature. Nature V. 540 453 2016.
ISSN: ESSN 1476-4687
PubMed: 27871088
DOI: 10.1038/NATURE20161
Page generated: Sun Sep 29 18:55:01 2024

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