Atomistry » Magnesium » PDB 5kfv-5ktj » 5klx
Atomistry »
  Magnesium »
    PDB 5kfv-5ktj »
      5klx »

Magnesium in PDB 5klx: Crystal Structure of Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed with SF110

Enzymatic activity of Crystal Structure of Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed with SF110

All present enzymatic activity of Crystal Structure of Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed with SF110:
5.2.1.8;

Protein crystallography data

The structure of Crystal Structure of Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed with SF110, PDB code: 5klx was solved by D.Fox Iii, T.E.Edwards, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.79 / 2.45
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 107.890, 34.110, 119.920, 90.00, 115.45, 90.00
R / Rfree (%) 19.8 / 25.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed with SF110 (pdb code 5klx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed with SF110, PDB code: 5klx:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 5klx

Go back to Magnesium Binding Sites List in 5klx
Magnesium binding site 1 out of 2 in the Crystal Structure of Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed with SF110


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed with SF110 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg202

b:14.7
occ:1.00
OD1 A:ASP51 2.0 38.1 1.0
O A:PRO52 2.2 22.8 1.0
O A:HOH349 2.5 39.9 1.0
CG A:ASP51 2.8 36.4 1.0
OD2 A:ASP51 3.0 41.4 1.0
C A:PRO52 3.4 20.7 1.0
O A:HOH303 3.8 28.8 1.0
C A:ASP51 4.0 37.9 1.0
N A:PRO52 4.1 38.6 1.0
O D:HOH326 4.2 39.9 1.0
O A:ASP51 4.2 30.4 1.0
CB A:ASP51 4.2 36.0 1.0
O A:HOH304 4.3 57.0 1.0
CA A:PRO52 4.3 29.1 1.0
N A:PHE53 4.4 19.3 1.0
CA A:ASP51 4.5 38.6 1.0
CA A:PHE53 4.6 19.6 1.0
CB A:PRO52 4.8 31.1 1.0
CD A:PRO52 4.9 27.0 1.0

Magnesium binding site 2 out of 2 in 5klx

Go back to Magnesium Binding Sites List in 5klx
Magnesium binding site 2 out of 2 in the Crystal Structure of Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed with SF110


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed with SF110 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg202

b:19.5
occ:1.00
OD1 B:ASP51 2.1 51.5 1.0
OD1 D:ASP51 2.1 49.2 1.0
O D:PRO52 2.1 29.5 1.0
O B:PRO52 2.3 33.9 1.0
O D:HOH311 2.6 29.6 1.0
CG B:ASP51 2.7 50.0 1.0
OD2 B:ASP51 2.7 46.8 1.0
O B:HOH318 2.8 35.0 1.0
CG D:ASP51 3.1 44.2 1.0
C D:PRO52 3.3 37.2 1.0
OD2 D:ASP51 3.5 44.3 1.0
C B:PRO52 3.6 38.3 1.0
O B:HOH307 4.0 37.5 1.0
N D:PRO52 4.1 50.5 1.0
C D:ASP51 4.1 47.0 1.0
O B:HOH310 4.1 44.5 1.0
CB B:ASP51 4.2 50.5 1.0
N D:PHE53 4.2 27.9 1.0
CA D:PRO52 4.3 44.5 1.0
C B:ASP51 4.3 49.9 1.0
CA D:PHE53 4.4 27.8 1.0
N B:PRO52 4.4 46.5 1.0
CB D:ASP51 4.4 36.4 1.0
O D:HOH327 4.4 35.1 1.0
O D:ASP51 4.5 49.1 1.0
N B:PHE53 4.5 33.3 1.0
CA B:PRO52 4.5 37.8 1.0
O B:ASP51 4.5 47.7 1.0
CA D:ASP51 4.6 41.6 1.0
CA B:PHE53 4.6 31.9 1.0
CD D:PRO52 4.6 36.0 1.0
CA B:ASP51 4.7 51.4 1.0
CB D:PRO52 4.9 41.3 1.0
N D:ALA54 4.9 43.3 1.0

Reference:

D.D.Lorimer, D.Fox Iii, F.Seufert, T.E.Edwards, U.Holzgrabe. Crystal Structure of Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed with SF110 To Be Published.
Page generated: Tue Aug 12 13:14:08 2025

Last articles

Na in 6J37
Na in 6J8E
Na in 6J6V
Na in 6J6O
Na in 6J3B
Na in 6J05
Na in 6J0H
Na in 6IWH
Na in 6IX8
Na in 6IX9
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy