Magnesium in PDB 5lmt: Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-3)

The structure of Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-3) also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 86;

Binding sites:

The binding sites of Magnesium atom in the Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-3) (pdb code 5lmt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 86 binding sites of Magnesium where determined in the Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-3), PDB code: 5lmt:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 86 in the Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-3) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1601 b:50.0 occ:1.00 OP2 A:U252 2.7 50.0 1.0 OP2 A:C267 2.9 50.0 1.0 O2' A:G266 3.0 50.0 1.0 NZ Q:LYS67 3.0 50.0 1.0 O3' A:G251 3.5 50.0 1.0 P A:U252 3.7 50.0 1.0 OP2 A:C268 3.9 50.0 1.0 CE Q:LYS67 3.9 50.0 1.0 P A:C267 4.0 50.0 1.0 OP1 A:C267 4.1 50.0 1.0 CD Q:LYS67 4.2 50.0 1.0 O2' A:G251 4.3 50.0 1.0 C2' A:G266 4.4 50.0 1.0 OP2 A:U253 4.4 50.0 1.0 OP1 A:C268 4.5 50.0 1.0 O5' A:U252 4.7 50.0 1.0 P A:C268 4.7 50.0 1.0 OP1 A:U252 4.8 50.0 1.0 C3' A:G251 4.8 50.0 1.0

Magnesium binding site 2 out of 86 in the Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-3) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1602 b:50.0 occ:1.00 OP1 A:A315 2.0 50.0 1.0 P A:A315 3.1 50.0 1.0 C5' A:A315 3.4 50.0 1.0 O5' A:A315 3.4 50.0 1.0 OP2 A:A315 3.7 50.0 1.0 N7 A:G318 4.0 50.0 1.0 O3' A:C314 4.5 50.0 1.0 C8 A:G318 4.5 50.0 1.0 OP2 A:G318 4.7 50.0 1.0 C4' A:A315 4.8 50.0 1.0 OP2 A:G317 4.9 50.0 1.0

Magnesium binding site 3 out of 86 in the Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-3) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1603 b:50.0 occ:1.00 OP2 A:A172 3.2 50.0 1.0 N7 A:G148 3.6 50.0 1.0 O6 A:G148 3.8 50.0 1.0 C5 A:G148 4.3 50.0 1.0 C6 A:G148 4.4 50.0 1.0 P A:A172 4.4 50.0 1.0 C8 A:G148 4.6 50.0 1.0 OP1 A:A172 4.7 50.0 1.0

Magnesium binding site 4 out of 86 in the Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-3) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1604 b:50.0 occ:1.00 OP1 A:G527 2.4 50.0 1.0 OP1 A:U13 2.9 50.0 1.0 O3' A:C526 2.9 50.0 1.0 P A:G527 3.0 50.0 1.0 O3' A:U12 3.2 50.0 1.0 OP2 A:G527 3.6 50.0 1.0 P A:U13 3.6 50.0 1.0 OP2 A:A914 3.8 50.0 1.0 OP2 A:U14 4.2 50.0 1.0 C3' A:C526 4.3 50.0 1.0 OP2 A:U13 4.3 50.0 1.0 O2' A:C526 4.4 50.0 1.0 O5' A:G527 4.5 50.0 1.0 C3' A:U12 4.5 50.0 1.0 C4' A:C526 4.7 50.0 1.0 O2' A:U12 4.8 50.0 1.0 P A:A914 4.9 50.0 1.0 OP1 A:A914 4.9 50.0 1.0 C2' A:C526 4.9 50.0 1.0 C4' A:U12 5.0 50.0 1.0 O5' A:U13 5.0 50.0 1.0

Magnesium binding site 5 out of 86 in the Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-3) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1605 b:50.0 occ:1.00 OP1 A:U793 2.3 50.0 1.0 P A:U793 3.6 50.0 1.0 OP2 A:U793 4.1 50.0 1.0 O6 A:G785 4.4 50.0 1.0 N7 A:G785 4.5 50.0 1.0 O3' A:A792 4.5 50.0 1.0 O5' A:U793 4.7 50.0 1.0 C4' A:U793 4.8 50.0 1.0

Magnesium binding site 6 out of 86 in the Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-3) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1606 b:50.0 occ:1.00 N7 A:A787 2.5 50.0 1.0 O4 A:U788 3.4 50.0 1.0 C8 A:A787 3.4 50.0 1.0 C5 A:A787 3.6 50.0 1.0 N6 A:A787 3.8 50.0 1.0 N7 A:G786 3.9 50.0 1.0 C4 A:U788 4.1 50.0 1.0 C6 A:A787 4.1 50.0 1.0 C8 A:G786 4.3 50.0 1.0 C5 A:G786 4.5 50.0 1.0 C5 A:U788 4.5 50.0 1.0 N9 A:A787 4.6 50.0 1.0 C4 A:A787 4.7 50.0 1.0 O3' A:A792 4.9 50.0 1.0 C6 A:G786 5.0 50.0 1.0 OP2 A:G786 5.0 50.0 1.0

Magnesium binding site 7 out of 86 in the Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-3) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1607 b:50.0 occ:1.00 OP2 A:A119 2.9 50.0 1.0 O4 A:U287 3.7 50.0 1.0 P A:A119 4.0 50.0 1.0 OP1 A:A119 4.3 50.0 1.0 OP2 A:G285 4.5 50.0 1.0 C4 A:U287 4.8 50.0 1.0 O5' A:A119 4.9 50.0 1.0 OP2 A:G286 4.9 50.0 1.0 N7 A:G286 4.9 50.0 1.0

Magnesium binding site 8 out of 86 in the Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-3) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1608 b:50.0 occ:1.00 OP1 A:G1508 1.3 50.0 1.0 OP1 A:A1500 1.8 50.0 1.0 P A:G1508 2.8 50.0 1.0 P A:A1500 2.9 50.0 1.0 O3' A:A1499 3.0 50.0 1.0 O5' A:G1508 3.5 50.0 1.0 O3' A:A1507 3.7 50.0 1.0 C5' A:G1508 3.7 50.0 1.0 O5' A:A1500 3.8 50.0 1.0 OP2 A:G1508 3.8 50.0 1.0 C5' A:A1500 3.8 50.0 1.0 OP1 A:G1521 3.9 50.0 1.0 OP1 A:G1505 4.1 50.0 1.0 OP2 A:A1500 4.2 50.0 1.0 C3' A:A1499 4.4 50.0 1.0 O3' A:G1504 4.5 50.0 1.0 O2' A:A1499 4.8 50.0 1.0

Magnesium binding site 9 out of 86 in the Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-3) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1609 b:50.0 occ:1.00 OP2 A:A195 1.5 50.0 1.0 P A:A195 2.9 50.0 1.0 O4 A:U180 3.2 50.0 1.0 O6 A:G181 3.3 50.0 1.0 O5' A:A195 3.4 50.0 1.0 C5' A:A195 3.5 50.0 1.0 O5' A:C194 3.6 50.0 1.0 C3' A:C194 3.7 50.0 1.0 O3' A:C194 3.8 50.0 1.0 OP1 A:A195 4.0 50.0 1.0 OP2 A:C194 4.0 50.0 1.0 P A:C194 4.2 50.0 1.0 C4 A:U180 4.2 50.0 1.0 OP1 A:C194 4.4 50.0 1.0 C6 A:C194 4.5 50.0 1.0 C5' A:C194 4.5 50.0 1.0 C6 A:G181 4.6 50.0 1.0 C5 A:U180 4.6 50.0 1.0 C4' A:C194 4.7 50.0 1.0 C2' A:C194 4.7 50.0 1.0 C5 A:C194 4.7 50.0 1.0 N7 A:A179 4.8 50.0 1.0 OP2 A:A179 4.9 50.0 1.0 C4' A:A195 4.9 50.0 1.0

Magnesium binding site 10 out of 86 in the Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-3) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1610 b:50.0 occ:1.00 OP2 A:G750 2.0 50.0 1.0 OP2 A:C749 2.6 50.0 1.0 P A:G750 3.5 50.0 1.0 O6 A:G752 3.8 50.0 1.0 P A:C749 3.8 50.0 1.0 OP1 A:G750 4.1 50.0 1.0 OP1 A:C749 4.2 50.0 1.0 O5' A:G750 4.2 50.0 1.0 O3' A:C749 4.5 50.0 1.0 O2' A:C748 4.6 50.0 1.0 C3' A:C749 4.7 50.0 1.0 O5' A:C749 4.8 50.0 1.0 N7 A:G750 4.8 50.0 1.0 O3' A:C748 5.0 50.0 1.0

T.Hussain, J.L.Llacer, B.T.Wimberly, J.S.Kieft, V.Ramakrishnan. Large-Scale Movements of IF3 and Trna During Bacterial Translation Initiation. Cell V. 167 133 2016.
ISSN: ISSN 1097-4172
PubMed: 27662086
DOI: 10.1016/J.CELL.2016.08.074