Magnesium in PDB 5m7q: Engineering the Thermostability of Nanobodies - NBD2

The structure of Engineering the Thermostability of Nanobodies - NBD2, PDB code: 5m7q was solved by N.Soler, P.Kunz, S.Muyldermans, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.69 / 1.80
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	49.058, 49.058, 225.735, 90.00, 90.00, 120.00
R / Rfree (%)	19.6 / 24.9

The structure of Engineering the Thermostability of Nanobodies - NBD2 also contains other interesting chemical elements:

Chlorine

(Cl)

7 atoms

The binding sites of Magnesium atom in the Engineering the Thermostability of Nanobodies - NBD2 (pdb code 5m7q). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Engineering the Thermostability of Nanobodies - NBD2, PDB code: 5m7q:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Engineering the Thermostability of Nanobodies - NBD2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Engineering the Thermostability of Nanobodies - NBD2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg206 b:47.7 occ:1.00 N B:GLY59 3.2 20.8 1.0 O B:HOH390 3.2 34.4 1.0 CA B:GLY59 3.9 23.3 1.0 C B:ALA58 4.2 20.1 1.0 CA B:ALA58 4.2 21.3 1.0 CD B:PRO60 4.4 25.9 1.0 CB B:ALA58 4.7 24.1 1.0 O B:HOH343 4.8 28.1 1.0

Magnesium binding site 2 out of 2 in the Engineering the Thermostability of Nanobodies - NBD2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Engineering the Thermostability of Nanobodies - NBD2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg205 b:48.2 occ:1.00 N A:GLY59 3.5 27.9 1.0 CA A:GLY59 4.1 25.1 1.0 C A:ALA58 4.5 30.4 1.0 CA A:ALA58 4.5 26.9 1.0 CD A:PRO60 4.7 28.3 1.0 CB A:ALA58 5.0 25.1 1.0

P.Kunz, T.Flock, N.Soler, M.Zaiss, C.Vincke, Y.Sterckx, S.Muyldermans, D.Kastelic, J.Hoheisel. Engineering the Thermostability of Nanobodies To Be Published.