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Magnesium in PDB 5nv1: SH3 Domain From Mouse Cortactin (C 2 2 21 Crystal Form)

Protein crystallography data

The structure of SH3 Domain From Mouse Cortactin (C 2 2 21 Crystal Form), PDB code: 5nv1 was solved by S.Twafra, M.Dessau, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.20 / 1.51
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 41.360, 55.950, 50.200, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Magnesium Binding Sites:

The binding sites of Magnesium atom in the SH3 Domain From Mouse Cortactin (C 2 2 21 Crystal Form) (pdb code 5nv1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the SH3 Domain From Mouse Cortactin (C 2 2 21 Crystal Form), PDB code: 5nv1:

Magnesium binding site 1 out of 1 in 5nv1

Go back to Magnesium Binding Sites List in 5nv1
Magnesium binding site 1 out of 1 in the SH3 Domain From Mouse Cortactin (C 2 2 21 Crystal Form)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of SH3 Domain From Mouse Cortactin (C 2 2 21 Crystal Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg103

b:27.6
occ:1.00
OD1 A:ASP13 1.9 27.5 1.0
O A:HOH217 2.0 34.6 1.0
O A:HOH220 2.1 32.6 1.0
OD1 A:ASP25 2.1 27.7 1.0
O A:HOH236 2.1 25.9 1.0
O A:HOH224 2.4 37.1 1.0
CG A:ASP13 3.0 27.9 1.0
CG A:ASP25 3.3 20.0 1.0
OD2 A:ASP13 3.3 29.0 1.0
O A:HOH255 3.8 35.8 1.0
O A:PHE24 3.9 15.3 1.0
O A:HOH228 4.1 27.0 1.0
OD2 A:ASP25 4.2 29.5 1.0
CB A:ASP25 4.2 17.0 1.0
CA A:ASP25 4.2 22.4 1.0
CB A:ASP13 4.3 25.6 1.0
C A:PHE24 4.3 17.1 1.0
O A:HOH225 4.3 35.5 1.0
N A:ASP25 4.4 15.6 1.0
O A:HOH259 4.7 45.9 1.0
O A:TYR14 4.9 15.2 1.0
CA A:ASP13 4.9 18.0 1.0

Reference:

S.Twafra, H.Gil-Henn, M.Dessau. SH3 Domain From Mouse Cortactin (C 2 2 21 Crystal Form) To Be Published.
Page generated: Sun Sep 29 23:39:42 2024

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