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Magnesium in PDB 5nwt: Crystal Structure of Escherichia Coli Rna Polymerase - SIGMA54 Holoenzyme Complex

Enzymatic activity of Crystal Structure of Escherichia Coli Rna Polymerase - SIGMA54 Holoenzyme Complex

All present enzymatic activity of Crystal Structure of Escherichia Coli Rna Polymerase - SIGMA54 Holoenzyme Complex:
2.7.7.6;

Protein crystallography data

The structure of Crystal Structure of Escherichia Coli Rna Polymerase - SIGMA54 Holoenzyme Complex, PDB code: 5nwt was solved by X.Zhang, M.Buck, V.C.Darbari, Y.Yang, N.Zhang, D.Lu, R.Glyde, Y.Wang, J.Winkelman, R.L.Gourse, K.S.Murakami, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 195.28 / 3.76
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 208.477, 151.525, 195.279, 90.00, 90.00, 90.00
R / Rfree (%) 31.3 / 37.1

Other elements in 5nwt:

The structure of Crystal Structure of Escherichia Coli Rna Polymerase - SIGMA54 Holoenzyme Complex also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Escherichia Coli Rna Polymerase - SIGMA54 Holoenzyme Complex (pdb code 5nwt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Escherichia Coli Rna Polymerase - SIGMA54 Holoenzyme Complex, PDB code: 5nwt:

Magnesium binding site 1 out of 1 in 5nwt

Go back to Magnesium Binding Sites List in 5nwt
Magnesium binding site 1 out of 1 in the Crystal Structure of Escherichia Coli Rna Polymerase - SIGMA54 Holoenzyme Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Escherichia Coli Rna Polymerase - SIGMA54 Holoenzyme Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1502

b:0.4
occ:1.00
OD2 D:ASP462 2.9 0.7 1.0
OD1 D:ASP462 3.3 0.5 1.0
CG D:ASP462 3.5 0.2 1.0
CB D:ASP460 3.7 0.6 1.0
OD2 D:ASP460 3.9 0.8 1.0
CG D:ASP460 3.9 0.8 1.0
OD2 D:ASP464 4.3 0.5 1.0
OD1 D:ASP460 4.8 0.6 1.0
CB D:ASP462 4.9 0.8 1.0
CA D:ASP460 5.0 0.3 1.0

Reference:

Y.Yang, V.C.Darbari, N.Zhang, D.Lu, R.Glyde, Y.P.Wang, J.T.Winkelman, R.L.Gourse, K.S.Murakami, M.Buck, X.Zhang. Transcription. Structures of the Rna Polymerase-SIGMA54 Reveal New and Conserved Regulatory Strategies. Science V. 349 882 2015.
ISSN: ESSN 1095-9203
PubMed: 26293966
DOI: 10.1126/SCIENCE.AAB1478
Page generated: Sun Sep 29 23:41:10 2024

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