Magnesium in PDB 5ouo: Structure of TGPLP1 Apcbeta Domain

The structure of Structure of TGPLP1 Apcbeta Domain, PDB code: 5ouo was solved by T.Ni, R.J.C.Gilbert, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.37 / 1.11
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	100.760, 50.210, 52.280, 90.00, 90.96, 90.00
R / Rfree (%)	14.9 / 16.7

The structure of Structure of TGPLP1 Apcbeta Domain also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Magnesium atom in the Structure of TGPLP1 Apcbeta Domain (pdb code 5ouo). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of TGPLP1 Apcbeta Domain, PDB code: 5ouo:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of TGPLP1 Apcbeta Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of TGPLP1 Apcbeta Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1101 b:15.8 occ:1.00 H A:ASN983 2.2 12.3 1.0 H A:THR948 2.4 11.1 1.0 HA A:VAL982 2.8 14.2 1.0 O A:HOH1396 2.8 20.9 1.0 HD22 A:ASN983 3.0 13.4 1.0 HA A:THR947 3.0 11.6 1.0 HG23 A:VAL982 3.0 18.6 1.0 N A:ASN983 3.0 10.3 1.0 O A:HOH1235 3.0 27.8 1.0 HG23 A:THR947 3.2 14.6 1.0 HB2 A:ASN983 3.2 12.2 1.0 N A:THR948 3.2 9.2 1.0 HB A:THR948 3.4 11.2 1.0 OG1 A:THR948 3.4 10.9 1.0 CA A:VAL982 3.6 11.8 1.0 CG2 A:VAL982 3.8 15.5 1.0 ND2 A:ASN983 3.8 11.1 1.0 HG22 A:VAL982 3.8 18.6 1.0 CB A:THR948 3.8 9.3 1.0 C A:VAL982 3.8 12.6 1.0 CA A:THR947 3.8 9.7 1.0 CB A:ASN983 3.9 10.1 1.0 CG2 A:THR947 4.0 12.1 1.0 CA A:ASN983 4.0 10.0 1.0 C A:THR947 4.0 9.6 1.0 HG22 A:THR947 4.1 14.6 1.0 HG1 A:THR948 4.1 13.0 1.0 CA A:THR948 4.1 8.9 1.0 O A:ASN983 4.2 11.5 1.0 CB A:VAL982 4.2 14.3 1.0 HG1 A:THR947 4.2 17.2 1.0 CG A:ASN983 4.4 9.7 1.0 HD21 A:ASN983 4.4 13.4 1.0 O A:CYS946 4.4 14.2 1.0 CB A:THR947 4.4 9.9 1.0 HB A:VAL982 4.5 17.2 1.0 O A:LEU981 4.5 14.6 1.0 HG21 A:VAL982 4.6 18.6 1.0 C A:ASN983 4.6 9.8 1.0 O A:HOH1254 4.7 24.8 1.0 N A:VAL982 4.7 11.9 1.0 HB3 A:ASN983 4.7 12.2 1.0 HG21 A:THR947 4.7 14.6 1.0 HA A:ASN983 4.8 12.0 1.0 OG1 A:THR947 4.8 14.3 1.0 O A:THR948 4.8 10.6 1.0 HA A:THR948 4.8 10.7 1.0 N A:THR947 5.0 9.8 1.0 C A:THR948 5.0 9.8 1.0

Magnesium binding site 2 out of 2 in the Structure of TGPLP1 Apcbeta Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of TGPLP1 Apcbeta Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1102 b:30.8 occ:0.65 O A:HOH1229 1.9 45.2 1.0 OE1 A:GLU986 2.2 22.1 1.0 O A:HOH1473 2.2 43.3 1.0 O A:HOH1244 2.2 33.9 1.0 O A:HOH1471 2.3 47.7 1.0 CD A:GLU986 3.1 33.7 1.0 O A:HOH1418 3.3 30.7 1.0 OE2 A:GLU986 3.4 20.7 1.0 H A:LEU987 4.0 13.9 1.0 O A:HOH1433 4.0 35.5 1.0 HA A:GLU986 4.0 13.7 1.0 O A:HOH1587 4.1 48.1 1.0 O A:LEU987 4.3 12.5 1.0 CG A:GLU986 4.5 17.3 1.0 N A:LEU987 4.6 11.6 1.0 HB2 A:GLU986 4.7 15.8 1.0 HG3 A:GLU986 4.8 20.7 1.0 CA A:GLU986 4.8 11.4 1.0 CB A:GLU986 4.9 13.1 1.0

T.Ni, S.I.Williams, S.Rezelj, G.Anderluh, K.Harlos, P.J.Stansfeld, R.J.C.Gilbert. Structures of Monomeric and Oligomeric Forms of Thetoxoplasma Gondiiperforin-Like Protein 1. Sci Adv V. 4 Q0762 2018.
ISSN: ESSN 2375-2548
PubMed: 29750191
DOI: 10.1126/SCIADV.AAQ0762