Atomistry » Magnesium » PDB 5osk-5p9s » 5oxt
Atomistry »
  Magnesium »
    PDB 5osk-5p9s »
      5oxt »

Magnesium in PDB 5oxt: Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Acetate

Enzymatic activity of Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Acetate

All present enzymatic activity of Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Acetate:
1.11.2.1;

Protein crystallography data

The structure of Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Acetate, PDB code: 5oxt was solved by M.Ramirez-Escudero, J.Sanz-Aparicio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.23 / 1.42
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 64.999, 99.151, 83.890, 90.00, 103.27, 90.00
R / Rfree (%) 15 / 16.4

Other elements in 5oxt:

The structure of Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Acetate also contains other interesting chemical elements:

Iron (Fe) 3 atoms
Chlorine (Cl) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Acetate (pdb code 5oxt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Acetate, PDB code: 5oxt:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 5oxt

Go back to Magnesium Binding Sites List in 5oxt
Magnesium binding site 1 out of 3 in the Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Acetate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Acetate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1001

b:4.8
occ:1.00
 O A:HOH1293 2.1 6.9 1.0
OE2 A:GLU122 2.1 6.6 1.0
O A:GLY123 2.1 6.2 1.0
O A:HOH1221 2.1 6.2 1.0
OG A:SER126 2.1 6.3 1.0
O1A A:HEM1000 2.2 5.6 1.0
CD A:GLU122 3.1 6.6 1.0
CGA A:HEM1000 3.2 5.5 1.0
C A:GLY123 3.2 6.4 1.0
O2A A:HEM1000 3.3 5.8 1.0
CB A:SER126 3.4 6.5 1.0
N A:GLY123 3.6 6.3 1.0
CG A:GLU122 3.6 6.6 1.0
CA A:GLY123 3.9 6.4 1.0
O A:HOH1266 4.0 7.4 1.0
O A:HOH1253 4.1 6.0 1.0
OE1 A:GLU122 4.2 6.9 1.0
O A:HOH1110 4.2 6.3 1.0
N A:ASP124 4.3 6.5 1.0
O A:ASN137 4.3 8.0 1.0
NH2 A:ARG189 4.3 6.5 1.0
N A:SER126 4.4 6.5 1.0
CA A:SER126 4.4 6.7 1.0
CBA A:HEM1000 4.5 5.5 1.0
C A:GLU122 4.6 6.5 1.0
CA A:ASP124 4.6 6.8 1.0
O A:GLY130 4.7 7.2 1.0
CZ A:ARG189 4.8 6.5 1.0
C A:ASP124 4.8 6.8 1.0
CB A:ARG129 4.8 7.1 1.0
CB A:GLU122 4.8 6.5 1.0
CA A:GLU122 4.9 6.6 1.0
CAA A:HEM1000 4.9 5.5 1.0
O A:ASP124 5.0 6.7 1.0
CB A:ASN137 5.0 8.2 1.0

Magnesium binding site 2 out of 3 in 5oxt

Go back to Magnesium Binding Sites List in 5oxt
Magnesium binding site 2 out of 3 in the Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Acetate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Acetate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg403

b:5.4
occ:1.00
 O B:HOH682 2.0 7.7 1.0
OE2 B:GLU122 2.1 7.4 1.0
O B:GLY123 2.1 6.8 1.0
O B:HOH569 2.1 6.8 1.0
OG B:SER126 2.1 6.8 1.0
O1A B:HEM402 2.3 6.2 1.0
CD B:GLU122 3.1 7.5 1.0
CGA B:HEM402 3.2 6.3 1.0
C B:GLY123 3.2 6.8 1.0
CB B:SER126 3.3 6.9 1.0
O2A B:HEM402 3.4 6.4 1.0
N B:GLY123 3.6 7.0 1.0
CG B:GLU122 3.6 7.4 1.0
CA B:GLY123 3.9 6.9 1.0
O B:HOH626 4.0 7.9 1.0
O B:HOH631 4.1 6.8 1.0
OE1 B:GLU122 4.2 7.6 1.0
O B:HOH505 4.2 7.2 1.0
O B:ASN137 4.3 9.5 1.0
N B:ASP124 4.3 6.9 1.0
NH2 B:ARG189 4.4 6.8 1.0
CA B:SER126 4.4 7.0 1.0
N B:SER126 4.4 6.9 1.0
CBA B:HEM402 4.6 6.2 1.0
C B:GLU122 4.6 7.2 1.0
CA B:ASP124 4.6 7.2 1.0
O B:GLY130 4.7 7.9 1.0
CB B:ARG129 4.8 8.0 1.0
CZ B:ARG189 4.8 6.9 1.0
C B:ASP124 4.8 7.1 1.0
CB B:GLU122 4.8 7.3 1.0
CA B:GLU122 4.9 7.3 1.0
CAA B:HEM402 5.0 6.2 1.0
O B:ASP124 5.0 7.1 1.0
CB B:ASN137 5.0 9.5 1.0

Magnesium binding site 3 out of 3 in 5oxt

Go back to Magnesium Binding Sites List in 5oxt
Magnesium binding site 3 out of 3 in the Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Acetate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Acetate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1001

b:6.9
occ:1.00
 O C:HOH1272 2.0 8.4 1.0
OE2 C:GLU122 2.1 8.7 1.0
O C:HOH1194 2.1 8.7 1.0
O C:GLY123 2.1 8.2 1.0
OG C:SER126 2.1 8.7 1.0
O1A C:HEM1000 2.3 7.4 1.0
CD C:GLU122 3.1 8.8 1.0
CGA C:HEM1000 3.2 7.3 1.0
C C:GLY123 3.2 8.5 1.0
CB C:SER126 3.3 8.7 1.0
O2A C:HEM1000 3.4 7.4 1.0
CG C:GLU122 3.6 8.7 1.0
N C:GLY123 3.6 8.3 1.0
CA C:GLY123 4.0 8.4 1.0
O C:HOH1240 4.0 10.1 1.0
O C:HOH1275 4.1 7.6 1.0
OE1 C:GLU122 4.2 9.2 1.0
O C:HOH1105 4.2 9.4 1.0
O C:ASN137 4.3 11.6 1.0
N C:ASP124 4.3 8.8 1.0
NH2 C:ARG189 4.4 8.3 1.0
CA C:SER126 4.4 9.1 1.0
N C:SER126 4.4 8.9 1.0
CBA C:HEM1000 4.6 7.2 1.0
C C:GLU122 4.6 8.5 1.0
CA C:ASP124 4.6 9.4 1.0
O C:GLY130 4.7 10.0 1.0
CB C:ARG129 4.8 10.1 1.0
CZ C:ARG189 4.8 8.5 1.0
CB C:GLU122 4.8 8.6 1.0
C C:ASP124 4.8 9.2 1.0
CA C:GLU122 4.9 8.6 1.0
CAA C:HEM1000 4.9 7.2 1.0
CB C:ASN137 5.0 11.3 1.0
O C:ASP124 5.0 9.3 1.0

Reference:

M.Ramirez-Escudero, J.Sanz-Aparicio. Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Acetate To Be Published.
Page generated: Mon Sep 30 01:24:51 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy