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Magnesium in PDB 5oy2: Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Dmp

Enzymatic activity of Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Dmp

All present enzymatic activity of Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Dmp:
1.11.2.1;

Protein crystallography data

The structure of Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Dmp, PDB code: 5oy2 was solved by M.Ramirez-Escudero, J.Sanz-Aparicio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.14 / 1.36
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 51.115, 58.021, 60.853, 90.00, 109.65, 90.00
R / Rfree (%) 16 / 17

Other elements in 5oy2:

The structure of Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Dmp also contains other interesting chemical elements:

Iron (Fe) 1 atom
Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Dmp (pdb code 5oy2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Dmp, PDB code: 5oy2:

Magnesium binding site 1 out of 1 in 5oy2

Go back to Magnesium Binding Sites List in 5oy2
Magnesium binding site 1 out of 1 in the Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Dmp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Dmp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1001

b:6.4
occ:1.00
 O A:HOH1289 2.1 10.7 1.0
O A:HOH1213 2.1 7.2 1.0
OE2 A:GLU122 2.1 8.8 1.0
OG A:SER126 2.2 6.6 1.0
O A:GLY123 2.2 7.1 1.0
O1A A:HEM1000 2.5 12.2 1.0
CD A:GLU122 3.2 8.7 1.0
CGA A:HEM1000 3.2 10.6 1.0
C A:GLY123 3.3 7.1 1.0
CB A:SER126 3.4 6.5 1.0
O2A A:HEM1000 3.4 11.6 1.0
CG A:GLU122 3.6 8.7 1.0
N A:GLY123 3.7 7.8 1.0
CA A:GLY123 4.0 7.5 1.0
O A:HOH1247 4.0 7.1 1.0
O A:HOH1117 4.2 7.9 1.0
O A:HOH1254 4.2 7.6 1.0
OE1 A:GLU122 4.2 8.8 1.0
O A:ASN137 4.3 8.0 1.0
N A:ASP124 4.4 6.8 1.0
N A:SER126 4.4 6.5 1.0
CA A:SER126 4.5 6.6 1.0
NH2 A:ARG189 4.5 8.4 1.0
CBA A:HEM1000 4.5 9.4 1.0
CA A:ASP124 4.6 6.8 1.0
C A:GLU122 4.7 8.4 1.0
O A:GLY130 4.8 6.6 1.0
CB A:GLU122 4.8 8.8 1.0
C A:ASP124 4.8 6.6 1.0
CZ A:ARG189 4.9 8.4 1.0
CB A:ARG129 4.9 6.9 1.0
CAA A:HEM1000 4.9 8.7 1.0
CA A:GLU122 4.9 8.9 1.0
CB A:ASN137 4.9 7.9 1.0

Reference:

M.Ramirez-Escudero, J.Sanz-Aparicio. Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Dmp To Be Published.
Page generated: Tue Aug 12 17:51:55 2025

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