Magnesium in PDB 5td3: Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis

Enzymatic activity of Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis

All present enzymatic activity of Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis:
1.13.11.1;

Protein crystallography data

The structure of Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis, PDB code: 5td3 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	40.51 / 1.75
*Space group*	C 1 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	169.410, 55.860, 85.690, 90.00, 116.30, 90.00
*R / R_free (%)*	17.7 / 21

Other elements in 5td3:

The structure of Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis also contains other interesting chemical elements:

Zinc	(Zn)	2 atoms
Chlorine	(Cl)	2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis (pdb code 5td3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis, PDB code: 5td3:

Magnesium binding site 1 out of 1 in 5td3

Go back to

Magnesium Binding Sites List in 5td3

Magnesium binding site 1 out of 1 in the Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg402 b:31.3 occ:1.00	O	A:HOH785	2.0	31.7	1.0
	O	A:HOH706	2.1	34.8	1.0
	O	A:HOH862	2.2	33.2	1.0
	O	A:HOH866	3.9	46.3	1.0
	O	A:HOH836	4.1	41.4	1.0
	O	A:HOH581	4.2	25.0	1.0
	O	A:GLY110	4.2	32.0	1.0
	O	A:HOH672	4.3	26.6	1.0
	O	A:HOH837	4.5	35.0	1.0
	O	A:HOH869	4.7	31.5	1.0
	O	A:HOH773	4.8	46.3	1.0

Reference:

D.G.Conrady, D.M.Dranow, D.Lorimer, T.E.Edwards. Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis To Be Published.

Page generated: Mon Sep 30 04:48:22 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF

	© Copyright 2008-2020 by atomistry.com
Home \| Site Map \| Copyright \| Contact us \| Privacy