Atomistry » Magnesium » PDB 5tff-5tv8 » 5tfg
Atomistry »
  Magnesium »
    PDB 5tff-5tv8 »
      5tfg »

Magnesium in PDB 5tfg: Nucleotide-Binding Domain 1 of the Human Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with 5-Methyl-Utp

Enzymatic activity of Nucleotide-Binding Domain 1 of the Human Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with 5-Methyl-Utp

All present enzymatic activity of Nucleotide-Binding Domain 1 of the Human Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with 5-Methyl-Utp:
3.6.3.49;

Protein crystallography data

The structure of Nucleotide-Binding Domain 1 of the Human Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with 5-Methyl-Utp, PDB code: 5tfg was solved by C.Wang, A.A.Aleksandrov, Z.Yang, F.Forouhar, E.Proctor, P.Kota, J.An, A.Kaplan, N.Khazanov, G.Boel, B.R.Stockwell, H.Senderowitz, N.V.Dokholyan, J.R.Riordan, C.G.Brouillette, J.F.Hunt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.15 / 1.91
Space group P 43
Cell size a, b, c (Å), α, β, γ (°) 40.147, 40.147, 141.787, 90.00, 90.00, 90.00
R / Rfree (%) 15.6 / 18.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Nucleotide-Binding Domain 1 of the Human Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with 5-Methyl-Utp (pdb code 5tfg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Nucleotide-Binding Domain 1 of the Human Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with 5-Methyl-Utp, PDB code: 5tfg:

Magnesium binding site 1 out of 1 in 5tfg

Go back to Magnesium Binding Sites List in 5tfg
Magnesium binding site 1 out of 1 in the Nucleotide-Binding Domain 1 of the Human Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with 5-Methyl-Utp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Nucleotide-Binding Domain 1 of the Human Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with 5-Methyl-Utp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg701

b:14.3
occ:1.00
O28 A:M5T702 2.0 19.7 1.0
OG1 A:THR465 2.0 14.5 1.0
O A:HOH818 2.1 12.6 1.0
OE1 A:GLN493 2.1 15.7 1.0
O22 A:M5T702 2.2 13.4 1.0
O A:HOH812 2.2 13.4 1.0
CD A:GLN493 3.1 20.5 1.0
CB A:THR465 3.1 17.0 1.0
P25 A:M5T702 3.3 16.3 1.0
P21 A:M5T702 3.3 15.5 1.0
NE2 A:GLN493 3.4 19.5 1.0
O24 A:M5T702 3.6 17.8 1.0
OD2 A:ASP572 3.9 17.8 1.0
N A:THR465 4.0 14.1 1.0
O19 A:M5T702 4.0 18.6 1.0
O27 A:M5T702 4.0 16.4 1.0
OD1 A:ASP572 4.1 14.1 1.0
O A:HOH881 4.1 16.0 1.0
CA A:THR465 4.1 14.8 1.0
CG2 A:THR465 4.2 14.4 1.0
O20 A:M5T702 4.4 16.0 1.0
CG A:ASP572 4.4 16.2 1.0
O26 A:M5T702 4.4 18.4 1.0
O23 A:M5T702 4.4 16.0 1.0
CG A:GLN493 4.4 18.9 1.0
P17 A:M5T702 4.7 17.8 1.0
O A:HOH837 4.9 17.3 1.0
CB A:GLN493 5.0 18.3 1.0

Reference:

C.Wang, A.A.Aleksandrov, Z.Yang, F.Forouhar, E.Proctor, P.Kota, J.An, A.Kaplan, N.Khazanov, G.Boel, B.R.Stockwell, H.Senderowitz, N.V.Dokholyan, J.R.Riordan, C.G.Brouillette, J.F.Hunt. Thermodynamic Correction of F508DEL-Cftr By Ligand Binding to A Remote Site in the Mutated Domain To Be Published.
Page generated: Tue Aug 12 20:29:19 2025

Last articles

Mg in 6KTX
Mg in 6KSH
Mg in 6KTW
Mg in 6KTV
Mg in 6KTB
Mg in 6KSA
Mg in 6KQK
Mg in 6KQJ
Mg in 6KQN
Mg in 6KQM
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy