Atomistry » Magnesium » PDB 5tff-5tv8 » 5tka
Atomistry »
  Magnesium »
    PDB 5tff-5tv8 »
      5tka »

Magnesium in PDB 5tka: Structure of the Hd-Domain Phosphohydrolase Oxsa

Protein crystallography data

The structure of Structure of the Hd-Domain Phosphohydrolase Oxsa, PDB code: 5tka was solved by J.Bridwell-Rabb, C.L.Drennan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.95 / 2.05
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 143.031, 143.031, 53.786, 90.00, 90.00, 120.00
R / Rfree (%) 20.6 / 25.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of the Hd-Domain Phosphohydrolase Oxsa (pdb code 5tka). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of the Hd-Domain Phosphohydrolase Oxsa, PDB code: 5tka:

Magnesium binding site 1 out of 1 in 5tka

Go back to Magnesium Binding Sites List in 5tka
Magnesium binding site 1 out of 1 in the Structure of the Hd-Domain Phosphohydrolase Oxsa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Hd-Domain Phosphohydrolase Oxsa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg201

b:41.1
occ:1.00
O A:HOH311 1.9 47.9 1.0
O A:HOH306 1.9 44.9 1.0
OD2 A:ASP67 2.1 47.0 1.0
OD1 A:ASP132 2.1 43.7 1.0
NE2 A:HIS66 2.2 43.6 1.0
NE2 A:HIS31 2.2 41.9 1.0
CD2 A:HIS66 3.0 46.6 1.0
CG A:ASP67 3.0 50.0 1.0
CE1 A:HIS31 3.1 39.7 1.0
CG A:ASP132 3.3 48.7 1.0
CD2 A:HIS31 3.3 39.3 1.0
OD1 A:ASP67 3.3 48.3 1.0
CE1 A:HIS66 3.3 45.2 1.0
OD2 A:ASP132 3.9 54.0 1.0
NH1 A:ARG16 4.2 39.7 1.0
CG A:HIS66 4.2 44.9 1.0
O A:HOH320 4.2 45.0 1.0
ND1 A:HIS31 4.3 35.8 1.0
CB A:ASP132 4.3 41.7 1.0
ND1 A:HIS66 4.3 44.9 1.0
CB A:ASP67 4.3 45.0 1.0
CG A:HIS31 4.4 38.6 1.0
CG2 A:VAL35 4.9 33.9 1.0

Reference:

J.Bridwell-Rabb, G.Kang, A.Zhong, H.W.Liu, C.L.Drennan. An Hd Domain Phosphohydrolase Active Site Tailored For Oxetanocin-A Biosynthesis. Proc. Natl. Acad. Sci. V. 113 13750 2016U.S.A..
ISSN: ESSN 1091-6490
PubMed: 27849620
DOI: 10.1073/PNAS.1613610113
Page generated: Tue Aug 12 20:31:44 2025

Last articles

Mg in 6CA4
Mg in 6C90
Mg in 6CA0
Mg in 6C9Y
Mg in 6C8Z
Mg in 6C8P
Mg in 6C8N
Mg in 6C8O
Mg in 6C8D
Mg in 6C8L
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy