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Magnesium in PDB 5ucr: Crystal Structure of A Pantoate-Beta-Alanine Ligase From Neisseria Gonorrhoeae with Bound Amppnp and Alanine

Enzymatic activity of Crystal Structure of A Pantoate-Beta-Alanine Ligase From Neisseria Gonorrhoeae with Bound Amppnp and Alanine

All present enzymatic activity of Crystal Structure of A Pantoate-Beta-Alanine Ligase From Neisseria Gonorrhoeae with Bound Amppnp and Alanine:
6.3.2.1;

Protein crystallography data

The structure of Crystal Structure of A Pantoate-Beta-Alanine Ligase From Neisseria Gonorrhoeae with Bound Amppnp and Alanine, PDB code: 5ucr was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.49 / 2.25
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 137.650, 137.650, 72.950, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 21.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Pantoate-Beta-Alanine Ligase From Neisseria Gonorrhoeae with Bound Amppnp and Alanine (pdb code 5ucr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of A Pantoate-Beta-Alanine Ligase From Neisseria Gonorrhoeae with Bound Amppnp and Alanine, PDB code: 5ucr:

Magnesium binding site 1 out of 1 in 5ucr

Go back to Magnesium Binding Sites List in 5ucr
Magnesium binding site 1 out of 1 in the Crystal Structure of A Pantoate-Beta-Alanine Ligase From Neisseria Gonorrhoeae with Bound Amppnp and Alanine


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Pantoate-Beta-Alanine Ligase From Neisseria Gonorrhoeae with Bound Amppnp and Alanine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg303

b:76.3
occ:1.00
 O A:GLY27 2.7 50.6 1.0
N3B A:ANP301 2.8 62.6 0.9
O A:HOH437 2.9 63.6 1.0
O2A A:ANP301 2.9 40.6 0.9
O3A A:ANP301 3.2 57.2 0.9
OG A:SER183 3.2 70.8 1.0
PA A:ANP301 3.5 45.9 0.9
PB A:ANP301 3.5 54.2 0.9
NE2 A:HIS33 3.8 47.9 1.0
CB A:MET26 3.8 38.4 1.0
C A:GLY27 3.8 48.2 1.0
CB A:SER183 3.9 68.4 1.0
C A:MET26 3.9 50.9 1.0
CE1 A:HIS33 3.9 48.3 1.0
O2B A:ANP301 3.9 54.4 0.9
O A:MET26 4.1 54.4 1.0
O1A A:ANP301 4.1 50.1 0.9
PG A:ANP301 4.2 72.7 0.9
N A:GLY27 4.2 49.3 1.0
CA A:MET26 4.2 45.2 1.0
O1G A:ANP301 4.2 81.9 0.9
N A:MET26 4.3 39.6 1.0
CB A:ASN28 4.5 61.7 1.0
CE A:MET26 4.6 60.8 1.0
CA A:GLY27 4.6 50.0 1.0
O A:ASN28 4.6 63.2 1.0
N A:ASN28 4.8 49.4 1.0
O2G A:ANP301 4.8 71.9 0.9
O5' A:ANP301 4.9 46.0 0.9
O1B A:ANP301 4.9 54.0 0.9
C A:ASN28 5.0 56.4 1.0
CD2 A:HIS33 5.0 47.1 1.0
CA A:ASN28 5.0 57.7 1.0
CG A:MET26 5.0 42.7 1.0

Reference:

D.M.Dranow, S.J.Mayclin, D.D.Lorimer, T.E.Edwards. Crystal Structure of A Pantoate-Beta-Alanine Ligase From Neisseria Gonorrhoeae with Bound Amppnp and Alanine To Be Published.
Page generated: Tue Aug 12 20:48:00 2025

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