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Magnesium in PDB 5ukd: pH Influences Fluoride Coordination Number of the Alfx Phosphoryl Transfer Transition State Analog

Enzymatic activity of pH Influences Fluoride Coordination Number of the Alfx Phosphoryl Transfer Transition State Analog

All present enzymatic activity of pH Influences Fluoride Coordination Number of the Alfx Phosphoryl Transfer Transition State Analog:
2.7.4.14;

Protein crystallography data

The structure of pH Influences Fluoride Coordination Number of the Alfx Phosphoryl Transfer Transition State Analog, PDB code: 5ukd was solved by I.Schlichting, J.Reinstein, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 1.90
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.500, 77.500, 100.200, 90.00, 90.00, 90.00
R / Rfree (%) 20.9 / 24.1

Other elements in 5ukd:

The structure of pH Influences Fluoride Coordination Number of the Alfx Phosphoryl Transfer Transition State Analog also contains other interesting chemical elements:

Fluorine (F) 3 atoms
Aluminium (Al) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the pH Influences Fluoride Coordination Number of the Alfx Phosphoryl Transfer Transition State Analog (pdb code 5ukd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the pH Influences Fluoride Coordination Number of the Alfx Phosphoryl Transfer Transition State Analog, PDB code: 5ukd:

Magnesium binding site 1 out of 1 in 5ukd

Go back to Magnesium Binding Sites List in 5ukd
Magnesium binding site 1 out of 1 in the pH Influences Fluoride Coordination Number of the Alfx Phosphoryl Transfer Transition State Analog


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of pH Influences Fluoride Coordination Number of the Alfx Phosphoryl Transfer Transition State Analog within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg500

b:12.6
occ:1.00
 F3 A:AF3501 2.2 21.9 1.0
O2B A:ADP195 2.2 9.5 1.0
O A:HOH227 2.3 14.2 1.0
O A:HOH220 2.3 14.7 1.0
O A:HOH215 2.3 12.5 1.0
O A:HOH198 2.4 15.6 1.0
PB A:ADP195 3.4 10.8 1.0
O3B A:ADP195 3.5 10.7 1.0
AL A:AF3501 3.5 26.9 1.0
O A:HOH197 4.0 17.2 1.0
O1P A:C5P196 4.0 12.1 1.0
NH1 A:ARG137 4.1 20.2 1.0
O2A A:ADP195 4.2 8.9 1.0
N A:GLY20 4.2 7.8 1.0
F2 A:AF3501 4.2 24.8 1.0
O2P A:C5P196 4.2 10.8 1.0
O3A A:ADP195 4.3 10.7 1.0
OD2 A:ASP89 4.3 9.5 1.0
CA A:GLY20 4.4 8.3 1.0
OD1 A:ASP89 4.4 9.7 1.0
O3P A:C5P196 4.4 12.6 1.0
P A:C5P196 4.4 13.2 1.0
OG A:SER36 4.4 9.7 1.0
O1B A:ADP195 4.4 9.5 1.0
NH1 A:ARG131 4.5 21.9 1.0
O A:HOH553 4.6 14.6 0.8
PA A:ADP195 4.7 9.7 1.0
O A:HOH208 4.7 15.9 1.0
CG A:ASP89 4.8 10.5 1.0
F1 A:AF3501 4.9 27.4 1.0
O1A A:ADP195 5.0 10.0 1.0

Reference:

I.Schlichting, J.Reinstein. pH Influences Fluoride Coordination Number of the Alfx Phosphoryl Transfer Transition State Analog. Nat.Struct.Biol. V. 6 721 1999.
ISSN: ISSN 1072-8368
PubMed: 10426946
DOI: 10.1038/11485
Page generated: Tue Aug 12 20:52:22 2025

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