Magnesium in PDB 5vm2: Crystal Structure of ECK1772, An Oxidoreductase/Dehydrogenase of Unknown Specificity Involved in Membrane Biogenesis From Escherichia Coli

The structure of Crystal Structure of ECK1772, An Oxidoreductase/Dehydrogenase of Unknown Specificity Involved in Membrane Biogenesis From Escherichia Coli, PDB code: 5vm2 was solved by P.J.Stogios, T.Skarina, C.Mcchesney, R.Di Leo, A.Savchenko, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.31 / 1.98
Space group	P 2 21 21
Cell size a, b, c (Å), α, β, γ (°)	63.994, 70.888, 149.460, 90.00, 90.00, 90.00
R / Rfree (%)	18.1 / 22.5

The structure of Crystal Structure of ECK1772, An Oxidoreductase/Dehydrogenase of Unknown Specificity Involved in Membrane Biogenesis From Escherichia Coli also contains other interesting chemical elements:

Chlorine	(Cl)	1 atom
Zinc	(Zn)	2 atoms

The binding sites of Magnesium atom in the Crystal Structure of ECK1772, An Oxidoreductase/Dehydrogenase of Unknown Specificity Involved in Membrane Biogenesis From Escherichia Coli (pdb code 5vm2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of ECK1772, An Oxidoreductase/Dehydrogenase of Unknown Specificity Involved in Membrane Biogenesis From Escherichia Coli, PDB code: 5vm2:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of ECK1772, An Oxidoreductase/Dehydrogenase of Unknown Specificity Involved in Membrane Biogenesis From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of ECK1772, An Oxidoreductase/Dehydrogenase of Unknown Specificity Involved in Membrane Biogenesis From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:32.0 occ:1.00 O A:HOH705 1.9 34.3 1.0 OE1 A:GLU152 2.0 43.1 1.0 OE1 A:GLU66 2.3 38.6 1.0 NE2 A:HIS65 2.4 39.8 1.0 CD A:GLU152 2.9 39.4 1.0 CD A:GLU66 3.1 37.7 1.0 OE2 A:GLU152 3.2 39.9 1.0 CD2 A:HIS65 3.2 37.7 1.0 CG A:GLU66 3.3 37.5 1.0 CE1 A:HIS65 3.3 39.8 1.0 O A:HOH583 3.5 40.7 1.0 CB A:CSO39 3.9 50.8 1.0 CG A:GLU152 4.2 34.9 1.0 N A:PRO153 4.3 25.6 1.0 OE2 A:GLU66 4.3 37.5 1.0 CD A:PRO153 4.4 27.3 1.0 CG A:HIS65 4.4 38.2 1.0 ND1 A:HIS65 4.4 39.2 1.0 SG A:CSO39 4.4 56.6 1.0 CA A:PRO153 4.5 24.2 1.0 CB A:PRO153 4.5 23.4 1.0 CB A:GLU152 4.6 32.0 1.0 CB A:GLU66 4.6 38.2 1.0 C A:GLU152 4.7 29.2 1.0 CG A:PRO153 4.9 25.3 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of ECK1772, An Oxidoreductase/Dehydrogenase of Unknown Specificity Involved in Membrane Biogenesis From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of ECK1772, An Oxidoreductase/Dehydrogenase of Unknown Specificity Involved in Membrane Biogenesis From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:27.4 occ:1.00 O B:HOH650 1.9 33.1 1.0 OE1 B:GLU152 2.1 38.5 1.0 OE1 B:GLU66 2.3 36.9 1.0 NE2 B:HIS65 2.3 40.1 1.0 CD B:GLU152 2.9 35.0 1.0 CD B:GLU66 3.1 34.3 1.0 CD2 B:HIS65 3.2 38.6 1.0 OE2 B:GLU152 3.2 35.9 1.0 CG B:GLU66 3.2 29.4 1.0 CE1 B:HIS65 3.4 40.2 1.0 SG B:CSO39 3.5 44.5 0.5 O B:HOH639 3.6 49.6 1.0 CB B:CSO39 3.8 41.5 0.5 OD B:CSO39 3.9 48.3 0.5 CB B:CSO39 4.0 42.4 0.5 CG B:GLU152 4.3 30.3 1.0 SG B:CSO39 4.3 46.9 0.5 OE2 B:GLU66 4.3 32.5 1.0 CG B:HIS65 4.4 38.4 1.0 N B:PRO153 4.4 26.6 1.0 CD B:PRO153 4.4 24.8 1.0 ND1 B:HIS65 4.4 38.4 1.0 CA B:PRO153 4.6 25.6 1.0 CB B:PRO153 4.6 25.7 1.0 CB B:GLU152 4.7 27.8 1.0 CB B:GLU66 4.7 26.0 1.0 O B:HOH820 4.7 49.5 1.0 C B:GLU152 4.8 27.8 1.0 OD B:CSO39 4.8 43.0 0.5

P.J.Stogios, P.J.Stogios, T.Skarina, C.Mcchesney, R.Di Leo, A.Savchenko, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid). N/A N/A.