Magnesium in PDB 5vn6: Crystal Structure of Taurine Dioxygenase From Burkholderia Ambifaria

All present enzymatic activity of Crystal Structure of Taurine Dioxygenase From Burkholderia Ambifaria:
1.14.11.17;

The structure of Crystal Structure of Taurine Dioxygenase From Burkholderia Ambifaria, PDB code: 5vn6 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.47 / 2.10
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	81.180, 84.890, 95.680, 90.00, 110.53, 90.00
R / Rfree (%)	16.5 / 20.5

The binding sites of Magnesium atom in the Crystal Structure of Taurine Dioxygenase From Burkholderia Ambifaria (pdb code 5vn6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Taurine Dioxygenase From Burkholderia Ambifaria, PDB code: 5vn6:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Taurine Dioxygenase From Burkholderia Ambifaria


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Taurine Dioxygenase From Burkholderia Ambifaria within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg300 b:48.0 occ:1.00 NE2 A:HIS258 2.1 57.3 1.0 OD1 A:ASP100 2.3 64.7 1.0 NE2 A:HIS98 2.4 53.2 1.0 O A:HOH521 2.6 65.0 1.0 CE1 A:HIS258 3.0 53.7 1.0 CD2 A:HIS258 3.2 52.3 1.0 CG A:ASP100 3.2 64.1 1.0 CE1 A:HIS98 3.3 51.2 1.0 CD2 A:HIS98 3.4 50.9 1.0 OD2 A:ASP100 3.5 72.8 1.0 ND1 A:HIS258 4.1 49.7 1.0 CG A:HIS258 4.3 48.1 1.0 ND1 A:HIS98 4.4 53.5 1.0 CG A:HIS98 4.5 50.9 1.0 CB A:ASP100 4.6 48.3 1.0 CA A:ASP100 4.9 43.3 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Taurine Dioxygenase From Burkholderia Ambifaria


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Taurine Dioxygenase From Burkholderia Ambifaria within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg300 b:47.7 occ:1.00 NE2 B:HIS258 2.1 65.8 1.0 OD1 B:ASP100 2.3 66.2 1.0 NE2 B:HIS98 2.3 48.2 1.0 CD2 B:HIS258 3.1 59.1 1.0 CE1 B:HIS258 3.1 63.0 1.0 CE1 B:HIS98 3.2 48.4 1.0 CG B:ASP100 3.3 74.7 1.0 CD2 B:HIS98 3.3 47.1 1.0 OD2 B:ASP100 3.5 78.3 1.0 CG B:HIS258 4.2 53.4 1.0 ND1 B:HIS258 4.2 59.2 1.0 ND1 B:HIS98 4.3 46.3 1.0 CG B:HIS98 4.4 46.6 1.0 CB B:ASP100 4.6 69.2 1.0 CB B:GLU94 4.9 44.5 1.0 CA B:ASP100 4.9 56.4 1.0

J.Abendroth, D.M.Dranow, D.D.Lorimer, T.E.Edwards. Crystal Structure of Taurine Dioxygenase From Burkholderia Ambifaria To Be Published.