Magnesium in PDB 5wde: Crystal Structure of the KIFC3 Motor Domain in Complex with Adp

The structure of Crystal Structure of the KIFC3 Motor Domain in Complex with Adp, PDB code: 5wde was solved by Y.Shen, W.Tempel, R.Landry, C.H.Arrowsmith, A.M.Edwards, H.Park, Structuralgenomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.08 / 1.85
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	187.608, 187.608, 151.363, 90.00, 90.00, 120.00
R / Rfree (%)	18.5 / 19.9

The binding sites of Magnesium atom in the Crystal Structure of the KIFC3 Motor Domain in Complex with Adp (pdb code 5wde). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the KIFC3 Motor Domain in Complex with Adp, PDB code: 5wde:

Magnesium binding site 1 out of 1 in the Crystal Structure of the KIFC3 Motor Domain in Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the KIFC3 Motor Domain in Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg902 b:32.3 occ:1.00 O A:HOH1017 2.0 32.8 1.0 O A:HOH1088 2.1 30.9 1.0 OG1 A:THR535 2.1 30.5 1.0 O3B A:ADP901 2.1 28.7 1.0 O A:HOH1074 2.1 30.2 1.0 O A:HOH1013 2.2 30.5 1.0 CB A:THR535 3.2 29.4 1.0 PB A:ADP901 3.3 31.1 1.0 O1B A:ADP901 3.5 30.9 1.0 N A:THR535 4.0 27.2 1.0 O A:HOH1118 4.0 44.0 1.0 O A:HOH1092 4.0 38.9 1.0 OD2 A:ASP674 4.1 35.4 1.0 CA A:THR535 4.2 28.6 1.0 CG2 A:THR535 4.3 29.7 1.0 O A:HOH1026 4.3 28.9 1.0 OD1 A:ASP674 4.3 34.1 1.0 O1A A:ADP901 4.3 35.0 1.0 O2B A:ADP901 4.3 29.5 1.0 O3A A:ADP901 4.4 31.5 1.0 O A:HOH1080 4.4 27.6 1.0 PA A:ADP901 4.6 32.8 1.0 CG A:ASP674 4.6 39.3 1.0 O2A A:ADP901 4.7 33.1 1.0 OG A:SER644 4.7 44.5 1.0 CE A:LYS534 4.8 27.6 1.0 CB A:LYS534 4.9 24.5 1.0 O A:HOH1015 4.9 38.1 1.0

H.W.Park, Z.Ma, H.Zhu, S.Jiang, R.C.Robinson, S.A.Endow. Structural Basis of Small Molecule Atpase Inhibition of A Human Mitotic Kinesin Motor Protein. Sci Rep V. 7 15121 2017.
ISSN: ESSN 2045-2322
PubMed: 29123223
DOI: 10.1038/S41598-017-14754-6