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Magnesium in PDB 5wni: Crystal Structure of Murine Receptor-Interacting Protein Kinase 4 (RIPK4) D143N in Complex with Atp

Enzymatic activity of Crystal Structure of Murine Receptor-Interacting Protein Kinase 4 (RIPK4) D143N in Complex with Atp

All present enzymatic activity of Crystal Structure of Murine Receptor-Interacting Protein Kinase 4 (RIPK4) D143N in Complex with Atp:
2.7.11.1;

Protein crystallography data

The structure of Crystal Structure of Murine Receptor-Interacting Protein Kinase 4 (RIPK4) D143N in Complex with Atp, PDB code: 5wni was solved by C.S.Huang, S.G.Hymowitz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.01 / 2.65
Space group I 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 71.569, 110.199, 145.324, 90.00, 90.00, 90.00
R / Rfree (%) 20.2 / 24.8

Other elements in 5wni:

The structure of Crystal Structure of Murine Receptor-Interacting Protein Kinase 4 (RIPK4) D143N in Complex with Atp also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Murine Receptor-Interacting Protein Kinase 4 (RIPK4) D143N in Complex with Atp (pdb code 5wni). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Murine Receptor-Interacting Protein Kinase 4 (RIPK4) D143N in Complex with Atp, PDB code: 5wni:

Magnesium binding site 1 out of 1 in 5wni

Go back to Magnesium Binding Sites List in 5wni
Magnesium binding site 1 out of 1 in the Crystal Structure of Murine Receptor-Interacting Protein Kinase 4 (RIPK4) D143N in Complex with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Murine Receptor-Interacting Protein Kinase 4 (RIPK4) D143N in Complex with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:72.4
occ:1.00
 OD1 A:ASN148 2.2 64.9 1.0
OD2 A:ASP161 2.2 68.8 1.0
O1B A:ATP403 2.2 98.5 1.0
O2A A:ATP403 2.2 0.2 1.0
CG A:ASN148 3.2 56.0 1.0
CG A:ASP161 3.3 70.8 1.0
PA A:ATP403 3.3 95.6 1.0
O5' A:ATP403 3.5 91.0 1.0
PB A:ATP403 3.5 0.5 1.0
ND2 A:ASN148 3.6 53.5 1.0
O3A A:ATP403 3.8 0.9 1.0
CB A:ASP161 4.0 65.0 1.0
O3B A:ATP403 4.1 0.3 1.0
OD1 A:ASP161 4.3 70.2 1.0
O3G A:ATP403 4.4 0.8 1.0
ND2 A:ASN143 4.5 75.5 1.0
CB A:ASN148 4.6 56.3 1.0
O1A A:ATP403 4.7 0.1 1.0
C5' A:ATP403 4.7 74.3 1.0
O A:ALA147 4.8 59.8 1.0
O2B A:ATP403 4.8 0.1 1.0
CE A:LYS145 4.9 73.4 1.0
C A:ALA147 4.9 58.9 1.0
CB A:ALA147 5.0 58.1 1.0
CA A:ASN148 5.0 57.2 1.0
O3' A:ATP403 5.0 53.9 1.0

Reference:

C.S.Huang, N.Oberbeck, Y.C.Hsiao, P.Liu, A.R.Johnson, V.M.Dixit, S.G.Hymowitz. Crystal Structure of RIPK4 Reveals Dimerization-Dependent Kinase Activity. Structure V. 26 767 2018.
ISSN: ISSN 1878-4186
PubMed: 29706531
DOI: 10.1016/J.STR.2018.04.002
Page generated: Mon Sep 30 06:37:43 2024

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