Magnesium in PDB 5x3t: Vapbc From Mycobacterium Tuberculosis

The structure of Vapbc From Mycobacterium Tuberculosis, PDB code: 5x3t was solved by S.M.Kang, D.H.Kim, H.J.Yoon, B.J.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.78 / 2.65
Space group	P 41
Cell size a, b, c (Å), α, β, γ (°)	64.221, 64.221, 216.134, 90.00, 90.00, 90.00
R / Rfree (%)	20.8 / 23.9

The binding sites of Magnesium atom in the Vapbc From Mycobacterium Tuberculosis (pdb code 5x3t). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Vapbc From Mycobacterium Tuberculosis, PDB code: 5x3t:

Magnesium binding site 1 out of 1 in the Vapbc From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Vapbc From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg201 b:69.5 occ:1.00 OD1 H:ASP97 2.8 79.4 1.0 OD1 H:ASP4 3.3 62.0 1.0 OE2 H:GLU42 3.4 61.3 1.0 CG H:ASP97 3.8 74.0 1.0 CB H:ALA96 4.0 43.0 1.0 OE1 H:GLU42 4.0 66.2 1.0 CD H:GLU42 4.1 58.2 1.0 CG H:ASP4 4.1 58.9 1.0 OD2 H:ASP4 4.2 60.3 1.0 OD2 H:ASP97 4.2 74.4 1.0 OG1 H:THR5 4.6 55.8 1.0 N H:ASP97 4.6 37.1 1.0 CB H:THR5 4.9 45.2 1.0 OD2 H:ASP116 4.9 96.1 1.0 C H:ALA96 5.0 47.1 1.0

S.M.Kang, D.H.Kim, K.Y.Lee, S.J.Park, H.J.Yoon, S.J.Lee, H.Im, B.J.Lee. Functional Details of the Mycobacterium Tuberculosis VAPBC26 Toxin-Antitoxin System Based on A Structural Study: Insights Into Unique Binding and Antibiotic Peptides. Nucleic Acids Res. V. 45 8564 2017.
ISSN: ESSN 1362-4962
PubMed: 28575388
DOI: 10.1093/NAR/GKX489