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Magnesium in PDB 5xc0: Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27

Enzymatic activity of Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27

All present enzymatic activity of Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27:
3.2.1.8;

Protein crystallography data

The structure of Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27, PDB code: 5xc0 was solved by H.Bansia, P.Mahanta, S.Ramakumar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.96 / 2.32
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 52.229, 67.390, 177.760, 90.00, 90.00, 90.00
R / Rfree (%) 20.2 / 24.8

Other elements in 5xc0:

The structure of Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 (pdb code 5xc0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27, PDB code: 5xc0:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 5xc0

Go back to Magnesium Binding Sites List in 5xc0
Magnesium binding site 1 out of 2 in the Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:2.9
occ:1.00
 O A:ARG351 2.2 14.1 1.0
OD1 A:ASP354 2.2 17.9 1.0
OD1 A:ASN292 2.3 15.6 1.0
O A:HOH543 2.3 1.0 1.0
O A:HOH512 2.4 5.1 1.0
O A:HOH559 2.5 24.4 1.0
CG A:ASP354 3.3 18.9 1.0
C A:ARG351 3.3 13.9 1.0
CG A:ASN292 3.4 15.5 1.0
OD2 A:ASP354 3.7 19.3 1.0
CB A:ASN292 4.2 15.4 1.0
CA A:ARG351 4.2 14.2 1.0
N A:ILE352 4.2 13.6 1.0
CA A:ILE352 4.2 13.8 1.0
O A:HOH578 4.2 2.3 1.0
CA A:ASN292 4.4 15.6 1.0
O A:ASP354 4.5 21.4 1.0
ND2 A:ASN292 4.5 15.9 1.0
O A:ASN292 4.6 16.7 1.0
C A:ASP354 4.6 21.0 1.0
CB A:ASP354 4.7 19.3 1.0
O A:HOH523 4.7 22.4 1.0
CB A:ARG351 4.8 14.1 1.0
OE1 A:GLU296 4.8 19.4 1.0
O A:HOH547 4.8 30.4 1.0
C A:ILE352 4.9 14.7 1.0
CG A:GLU296 4.9 17.3 1.0
N A:ASP354 4.9 19.2 1.0
CA A:ASP354 4.9 19.8 1.0
C A:ASN292 5.0 16.6 1.0

Magnesium binding site 2 out of 2 in 5xc0

Go back to Magnesium Binding Sites List in 5xc0
Magnesium binding site 2 out of 2 in the Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg401

b:9.0
occ:1.00
 O B:HOH503 2.2 22.6 1.0
O B:ARG351 2.2 27.9 1.0
OD1 B:ASN292 2.2 28.9 1.0
OD1 B:ASP354 2.3 30.9 1.0
O B:HOH502 2.9 25.6 1.0
CG B:ASP354 3.3 30.5 1.0
C B:ARG351 3.4 27.1 1.0
CG B:ASN292 3.4 28.2 1.0
OD2 B:ASP354 3.6 33.1 1.0
N B:ILE352 4.3 24.9 1.0
CB B:ASN292 4.3 28.0 1.0
CA B:ILE352 4.3 24.1 1.0
CA B:ARG351 4.3 28.5 1.0
ND2 B:ASN292 4.4 28.3 1.0
CA B:ASN292 4.5 27.2 1.0
CB B:ASP354 4.7 29.3 1.0
O B:ASN292 4.7 26.1 1.0
O B:ASP354 4.8 26.7 1.0
OE1 B:GLU296 4.8 35.1 1.0
CG B:GLU296 4.8 31.5 1.0
CB B:ARG351 4.9 30.4 1.0
C B:ILE352 4.9 23.1 1.0
C B:ASP354 5.0 27.8 1.0
N B:ASP354 5.0 26.2 1.0

Reference:

H.Bansia, P.Mahanta, S.Ramakumar. Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 To Be Published.
Page generated: Mon Sep 30 09:16:00 2024

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