Magnesium in PDB 5xp0: Crystal Structure of Master Biofilm Regulator Csgd Regulatory Domain

The structure of Crystal Structure of Master Biofilm Regulator Csgd Regulatory Domain, PDB code: 5xp0 was solved by Y.Wen, Z.Ouyang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.36 / 2.00
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	57.758, 57.758, 207.742, 90.00, 90.00, 90.00
R / Rfree (%)	20.6 / 23.8

The binding sites of Magnesium atom in the Crystal Structure of Master Biofilm Regulator Csgd Regulatory Domain (pdb code 5xp0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Master Biofilm Regulator Csgd Regulatory Domain, PDB code: 5xp0:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Master Biofilm Regulator Csgd Regulatory Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Master Biofilm Regulator Csgd Regulatory Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg201 b:33.2 occ:1.00 H A:TYR109 2.4 37.9 1.0 H A:ALA110 2.6 43.5 1.0 HE2 A:TYR130 3.0 47.7 1.0 HA A:PHE108 3.0 35.4 1.0 N A:TYR109 3.2 31.5 1.0 O A:HOH351 3.2 37.3 1.0 HD1 A:PHE108 3.3 38.5 1.0 N A:ALA110 3.4 36.2 1.0 HB2 A:ALA110 3.5 53.5 1.0 OH A:TYR130 3.6 45.3 1.0 HB2 A:TYR109 3.6 48.5 1.0 HB3 A:ALA110 3.7 53.5 1.0 CE2 A:TYR130 3.8 39.7 1.0 CA A:PHE108 3.8 29.4 1.0 HD2 A:TYR109 3.9 46.3 1.0 HB3 A:PHE108 3.9 44.4 1.0 HE1 A:HIS116 4.0 0.6 1.0 CB A:ALA110 4.0 44.5 1.0 ND1 A:HIS116 4.0 0.5 1.0 C A:PHE108 4.0 30.9 1.0 CE1 A:HIS116 4.1 0.8 1.0 CA A:TYR109 4.1 36.0 1.0 CZ A:TYR130 4.2 38.1 1.0 CD1 A:PHE108 4.2 32.0 1.0 C A:TYR109 4.2 36.7 1.0 CB A:TYR109 4.3 40.4 1.0 CA A:ALA110 4.3 48.5 1.0 HH A:TYR130 4.3 54.4 1.0 CB A:PHE108 4.3 36.9 1.0 HG22 A:VAL117 4.4 38.5 1.0 O A:VAL107 4.5 32.0 1.0 CD2 A:TYR109 4.7 38.5 1.0 CG A:HIS116 4.8 0.1 1.0 CG A:PHE108 4.8 33.8 1.0 HB3 A:HIS116 4.9 76.4 1.0 NE2 A:HIS116 4.9 0.2 1.0 HA A:ALA110 4.9 58.3 1.0 HB1 A:ALA110 4.9 53.5 1.0 CG A:TYR109 4.9 30.8 1.0 HA A:TYR109 5.0 43.2 1.0 CD2 A:TYR130 5.0 31.1 1.0 N A:PHE108 5.0 28.0 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Master Biofilm Regulator Csgd Regulatory Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Master Biofilm Regulator Csgd Regulatory Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg202 b:34.9 occ:1.00 HD22 A:ASN42 2.3 29.8 1.0 HE A:ARG45 2.4 47.7 1.0 HB2 A:ASN42 3.0 36.0 1.0 ND2 A:ASN42 3.2 24.8 1.0 NE A:ARG45 3.2 39.7 1.0 HG2 A:PRO19 3.3 43.3 1.0 HH21 A:ARG45 3.3 53.4 1.0 HD2 A:ARG45 3.7 40.5 1.0 CB A:ASN42 3.7 29.9 1.0 HD21 A:ASN42 3.7 29.8 1.0 HB3 A:ASN42 3.8 36.0 1.0 NH2 A:ARG45 4.0 44.4 1.0 O A:HOH347 4.0 49.0 1.0 CG A:ASN42 4.0 29.2 1.0 CD A:ARG45 4.0 33.6 1.0 CZ A:ARG45 4.0 35.8 1.0 CG A:PRO19 4.1 36.0 1.0 O A:HOH337 4.1 27.4 1.0 HG3 A:PRO19 4.1 43.3 1.0 HG3 A:ARG45 4.4 37.1 1.0 HH22 A:ARG45 4.7 53.4 1.0 H A:ASN42 4.8 34.5 1.0 HD3 A:ARG45 4.8 40.5 1.0 CG A:ARG45 4.8 30.8 1.0

Y.Wen, Z.Ouyang, B.Devreese, W.He, Y.Shao, W.Lu, F.Zheng. Crystal Structure of Master Biofilm Regulator Csgd Regulatory Domain Reveals An Atypical Receiver Domain. Protein Sci. V. 26 2073 2017.
ISSN: ESSN 1469-896X
PubMed: 28758290
DOI: 10.1002/PRO.3245