Magnesium in PDB 5xu1: Structure of A Non-Canonical Abc Transporter From Streptococcus Pneumoniae R6

The structure of Structure of A Non-Canonical Abc Transporter From Streptococcus Pneumoniae R6, PDB code: 5xu1 was solved by H.B.Yang, Y.L.Jiang, W.T.Hou, M.T.Chen, Y.Chen, C.Z.Zhou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 3.30
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	141.053, 154.987, 205.892, 90.00, 90.00, 90.00
R / Rfree (%)	23.4 / 28.9

The binding sites of Magnesium atom in the Structure of A Non-Canonical Abc Transporter From Streptococcus Pneumoniae R6 (pdb code 5xu1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of A Non-Canonical Abc Transporter From Streptococcus Pneumoniae R6, PDB code: 5xu1:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of A Non-Canonical Abc Transporter From Streptococcus Pneumoniae R6


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of A Non-Canonical Abc Transporter From Streptococcus Pneumoniae R6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:33.1 occ:1.00 CB A:LYS47 3.3 88.1 1.0 N A:LYS47 3.3 91.3 1.0 N A:GLY44 3.4 0.8 1.0 CA A:GLY44 3.6 0.6 1.0 N A:SER45 3.7 0.7 1.0 OG A:SER48 3.8 83.4 1.0 CA A:LYS47 3.8 89.0 1.0 N A:SER48 3.9 87.5 1.0 N A:GLY46 3.9 0.0 1.0 C A:GLY44 4.1 0.2 1.0 C A:GLY46 4.3 95.8 1.0 CE A:LYS47 4.4 94.0 1.0 C A:LYS47 4.4 86.7 1.0 CA A:GLY46 4.4 0.6 1.0 NZ A:LYS47 4.4 96.4 1.0 C A:SER43 4.5 100.0 1.0 OG A:SER45 4.6 0.1 1.0 CG A:LYS47 4.6 88.3 1.0 O A:PRO42 4.7 97.6 1.0 CA A:SER45 4.8 0.1 1.0 C A:SER45 4.8 0.3 1.0 CD A:LYS47 4.8 90.4 1.0 CB A:SER48 4.8 84.8 1.0 CA A:SER43 4.9 1.0 1.0 CA A:SER48 5.0 87.4 1.0

Magnesium binding site 2 out of 2 in the Structure of A Non-Canonical Abc Transporter From Streptococcus Pneumoniae R6


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of A Non-Canonical Abc Transporter From Streptococcus Pneumoniae R6 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg301 b:50.0 occ:1.00 O B:HOH402 1.5 57.0 1.0 OG B:SER48 2.7 81.6 1.0 CE B:LYS47 3.1 88.1 1.0 N B:GLY46 3.5 94.5 1.0 N B:LYS47 3.5 84.3 1.0 NZ B:LYS47 3.5 89.8 1.0 CA B:GLY46 3.6 89.7 1.0 N B:SER48 3.8 84.1 1.0 CB B:SER48 3.9 82.3 1.0 C B:GLY46 4.0 85.5 1.0 N B:GLY44 4.2 97.9 1.0 CA B:LYS47 4.4 85.3 1.0 CD B:LYS47 4.4 88.8 1.0 CB B:LYS47 4.5 88.4 1.0 N B:SER45 4.5 95.0 1.0 CA B:SER48 4.6 80.4 1.0 C B:SER45 4.6 97.5 1.0 C B:LYS47 4.7 85.3 1.0 CG B:LYS47 4.7 89.1 1.0 O B:PRO42 4.8 96.4 1.0 C B:GLY44 4.9 93.2 1.0 CA B:GLY44 4.9 95.9 1.0 CA B:SER43 4.9 93.7 1.0

H.B.Yang, W.T.Hou, M.T.Cheng, Y.L.Jiang, Y.Chen, C.Z.Zhou. Structure of A Macab-Like Efflux Pump From Streptococcus Pneumoniae. Nat Commun V. 9 196 2018.
ISSN: ESSN 2041-1723
PubMed: 29335499
DOI: 10.1038/S41467-017-02741-4