Magnesium in PDB 5zgb: Cryo-Em Structure of the Red Algal Psi-Lhcr

All present enzymatic activity of Cryo-Em Structure of the Red Algal Psi-Lhcr:
1.97.1.12;

The structure of Cryo-Em Structure of the Red Algal Psi-Lhcr also contains other interesting chemical elements:

Iron

(Fe)

12 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 150; Page 16, Binding sites: 151 - 158;

Binding sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of the Red Algal Psi-Lhcr (pdb code 5zgb). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 158 binding sites of Magnesium where determined in the Cryo-Em Structure of the Red Algal Psi-Lhcr, PDB code: 5zgb:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 158 in the Cryo-Em Structure of the Red Algal Psi-Lhcr


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Red Algal Psi-Lhcr within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg801 b:71.7 occ:1.00 MG A:CL0801 0.0 71.7 1.0 NB A:CL0801 1.9 71.7 1.0 ND A:CL0801 2.0 71.7 1.0 NC A:CL0801 2.0 71.7 1.0 NA A:CL0801 2.1 71.7 1.0 C4A A:CL0801 2.8 71.7 1.0 C1B A:CL0801 2.8 71.7 1.0 C4B A:CL0801 2.8 71.7 1.0 C1C A:CL0801 2.8 71.7 1.0 NE2 A:HIS673 2.9 53.2 1.0 C4D A:CL0801 3.0 71.7 1.0 C1D A:CL0801 3.0 71.7 1.0 C4C A:CL0801 3.0 71.7 1.0 CHB A:CL0801 3.1 71.7 1.0 CHC A:CL0801 3.1 71.7 1.0 C1A A:CL0801 3.2 71.7 1.0 CD2 A:HIS673 3.4 53.2 1.0 CHD A:CL0801 3.4 71.7 1.0 CHA A:CL0801 3.6 71.7 1.0 C3B B:CLA806 3.8 78.1 1.0 C4B B:CLA806 4.0 78.1 1.0 CAB B:CLA806 4.0 78.1 1.0 C3A A:CL0801 4.0 71.7 1.0 C2B A:CL0801 4.0 71.7 1.0 C3B A:CL0801 4.0 71.7 1.0 CE1 A:HIS673 4.1 53.2 1.0 C2C A:CL0801 4.1 71.7 1.0 C3D A:CL0801 4.1 71.7 1.0 C2B B:CLA806 4.2 78.1 1.0 C2D A:CL0801 4.2 71.7 1.0 C3C A:CL0801 4.2 71.7 1.0 C2A A:CL0801 4.3 71.7 1.0 CHC B:CLA806 4.3 78.1 1.0 NB B:CLA806 4.4 78.1 1.0 C1B B:CLA806 4.5 78.1 1.0 CG A:HIS673 4.6 53.2 1.0 CMA A:CL0801 4.7 71.7 1.0 CMB B:CLA806 4.7 78.1 1.0 ND1 A:HIS673 5.0 53.2 1.0

Magnesium binding site 2 out of 158 in the Cryo-Em Structure of the Red Algal Psi-Lhcr


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Red Algal Psi-Lhcr within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg802 b:77.4 occ:1.00 MG A:CLA802 0.0 77.4 1.0 NB A:CLA802 2.0 77.4 1.0 ND A:CLA802 2.0 77.4 1.0 NC A:CLA802 2.1 77.4 1.0 NA A:CLA802 2.1 77.4 1.0 C4D A:CLA802 2.9 77.4 1.0 C4A A:CLA802 3.0 77.4 1.0 C1B A:CLA802 3.0 77.4 1.0 C1C A:CLA802 3.1 77.4 1.0 C4B A:CLA802 3.1 77.4 1.0 NE2 A:HIS53 3.1 73.0 1.0 C4C A:CLA802 3.1 77.4 1.0 C1D A:CLA802 3.1 77.4 1.0 C1A A:CLA802 3.1 77.4 1.0 CHB A:CLA802 3.4 77.4 1.0 CHC A:CLA802 3.4 77.4 1.0 CE1 A:HIS53 3.4 73.0 1.0 CHA A:CLA802 3.5 77.4 1.0 CHD A:CLA802 3.5 77.4 1.0 C7 A:CLA809 4.0 77.6 1.0 C3D A:CLA802 4.2 77.4 1.0 C2B A:CLA802 4.3 77.4 1.0 C3B A:CLA802 4.3 77.4 1.0 C2C A:CLA802 4.3 77.4 1.0 C3C A:CLA802 4.3 77.4 1.0 C2D A:CLA802 4.3 77.4 1.0 C3A A:CLA802 4.3 77.4 1.0 CD2 A:HIS53 4.4 73.0 1.0 C2A A:CLA802 4.4 77.4 1.0 C5 A:CLA809 4.6 77.6 1.0 C10 A:CLA809 4.7 77.6 1.0 ND1 A:HIS53 4.7 73.0 1.0 C6 A:CLA809 4.8 77.6 1.0 C8 A:CLA809 4.8 77.6 1.0 CBD A:CLA802 4.9 77.4 1.0 CAB J:CLA101 5.0 77.2 1.0

Magnesium binding site 3 out of 158 in the Cryo-Em Structure of the Red Algal Psi-Lhcr


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of the Red Algal Psi-Lhcr within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg803 b:76.4 occ:1.00 MG A:CLA803 0.0 76.4 1.0 NB A:CLA803 2.0 76.4 1.0 ND A:CLA803 2.0 76.4 1.0 NA A:CLA803 2.1 76.4 1.0 NC A:CLA803 2.1 76.4 1.0 C4D A:CLA803 2.9 76.4 1.0 C1B A:CLA803 3.0 76.4 1.0 C4A A:CLA803 3.0 76.4 1.0 C1C A:CLA803 3.0 76.4 1.0 C4B A:CLA803 3.0 76.4 1.0 C1A A:CLA803 3.1 76.4 1.0 C4C A:CLA803 3.1 76.4 1.0 C1D A:CLA803 3.1 76.4 1.0 CE1 A:HIS73 3.3 61.1 1.0 CMB A:CLA828 3.3 75.5 1.0 CHB A:CLA803 3.4 76.4 1.0 CHA A:CLA803 3.4 76.4 1.0 CHC A:CLA803 3.4 76.4 1.0 CHD A:CLA803 3.5 76.4 1.0 NE2 A:HIS73 3.8 61.1 1.0 ND1 A:HIS73 4.0 61.1 1.0 C3D A:CLA803 4.2 76.4 1.0 C2B A:CLA803 4.3 76.4 1.0 C3B A:CLA803 4.3 76.4 1.0 C2C A:CLA803 4.3 76.4 1.0 C2D A:CLA803 4.3 76.4 1.0 C3C A:CLA803 4.3 76.4 1.0 C3A A:CLA803 4.4 76.4 1.0 C2A A:CLA803 4.4 76.4 1.0 C2B A:CLA828 4.6 75.5 1.0 CG1 A:ILE69 4.7 69.3 1.0 CD1 A:ILE69 4.7 69.3 1.0 CBB A:CLA828 4.7 75.5 1.0 CD2 A:HIS73 4.7 61.1 1.0 CG A:HIS73 4.8 61.1 1.0 CBD A:CLA803 4.9 76.4 1.0

Magnesium binding site 4 out of 158 in the Cryo-Em Structure of the Red Algal Psi-Lhcr


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of the Red Algal Psi-Lhcr within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg804 b:75.5 occ:1.00 MG A:CLA804 0.0 75.5 1.0 NB A:CLA804 2.0 75.5 1.0 ND A:CLA804 2.0 75.5 1.0 NC A:CLA804 2.1 75.5 1.0 NA A:CLA804 2.1 75.5 1.0 C4D A:CLA804 2.9 75.5 1.0 C1B A:CLA804 3.0 75.5 1.0 C4A A:CLA804 3.0 75.5 1.0 C4B A:CLA804 3.0 75.5 1.0 C1C A:CLA804 3.1 75.5 1.0 NE2 A:GLN76 3.1 60.6 1.0 C4C A:CLA804 3.1 75.5 1.0 C1D A:CLA804 3.1 75.5 1.0 C1A A:CLA804 3.1 75.5 1.0 CHB A:CLA804 3.4 75.5 1.0 CHC A:CLA804 3.4 75.5 1.0 CHA A:CLA804 3.4 75.5 1.0 C16 A:CLA804 3.5 75.5 1.0 CHD A:CLA804 3.5 75.5 1.0 CD A:GLN76 3.6 60.6 1.0 OE1 A:GLN76 3.7 60.6 1.0 C17 A:CLA804 4.0 75.5 1.0 C19 A:CLA804 4.2 75.5 1.0 C3D A:CLA804 4.2 75.5 1.0 C2B A:CLA804 4.3 75.5 1.0 C3B A:CLA804 4.3 75.5 1.0 C2C A:CLA804 4.3 75.5 1.0 C3C A:CLA804 4.3 75.5 1.0 C2D A:CLA804 4.3 75.5 1.0 C3A A:CLA804 4.4 75.5 1.0 C2A A:CLA804 4.5 75.5 1.0 C18 A:CLA804 4.7 75.5 1.0 CG A:GLN76 4.9 60.6 1.0 CBD A:CLA804 4.9 75.5 1.0 C15 A:CLA804 4.9 75.5 1.0 CMA A:CLA803 5.0 76.4 1.0

Magnesium binding site 5 out of 158 in the Cryo-Em Structure of the Red Algal Psi-Lhcr


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of the Red Algal Psi-Lhcr within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg805 b:82.6 occ:1.00 MG A:CLA805 0.0 82.6 1.0 NB A:CLA805 2.0 82.6 1.0 ND A:CLA805 2.0 82.6 1.0 NA A:CLA805 2.1 82.6 1.0 NC A:CLA805 2.1 82.6 1.0 C4D A:CLA805 2.9 82.6 1.0 C1B A:CLA805 3.0 82.6 1.0 C4A A:CLA805 3.0 82.6 1.0 C4B A:CLA805 3.0 82.6 1.0 C1C A:CLA805 3.1 82.6 1.0 C1D A:CLA805 3.1 82.6 1.0 C4C A:CLA805 3.1 82.6 1.0 C1A A:CLA805 3.1 82.6 1.0 NE2 A:HIS90 3.3 73.1 1.0 CHB A:CLA805 3.4 82.6 1.0 CHC A:CLA805 3.4 82.6 1.0 CHA A:CLA805 3.5 82.6 1.0 CHD A:CLA805 3.5 82.6 1.0 CE1 A:HIS90 3.7 73.1 1.0 C3D A:CLA805 4.2 82.6 1.0 C2B A:CLA805 4.2 82.6 1.0 C3B A:CLA805 4.3 82.6 1.0 C2C A:CLA805 4.3 82.6 1.0 C2D A:CLA805 4.3 82.6 1.0 CD2 A:HIS90 4.3 73.1 1.0 C3C A:CLA805 4.4 82.6 1.0 C3A A:CLA805 4.4 82.6 1.0 C2A A:CLA805 4.4 82.6 1.0 O1A A:CLA805 4.7 82.6 1.0 ND1 A:HIS90 4.8 73.1 1.0 CGA A:CLA805 4.9 82.6 1.0 CBD A:CLA805 4.9 82.6 1.0 CBA A:CLA805 5.0 82.6 1.0

Magnesium binding site 6 out of 158 in the Cryo-Em Structure of the Red Algal Psi-Lhcr


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryo-Em Structure of the Red Algal Psi-Lhcr within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg806 b:76.8 occ:1.00 MG A:CLA806 0.0 76.8 1.0 NB A:CLA806 2.0 76.8 1.0 ND A:CLA806 2.0 76.8 1.0 NC A:CLA806 2.1 76.8 1.0 NA A:CLA806 2.1 76.8 1.0 C4D A:CLA806 2.9 76.8 1.0 C1B A:CLA806 3.0 76.8 1.0 OE1 A:GLN112 3.0 76.8 1.0 C4A A:CLA806 3.0 76.8 1.0 C4B A:CLA806 3.0 76.8 1.0 C1C A:CLA806 3.1 76.8 1.0 C4C A:CLA806 3.1 76.8 1.0 C1D A:CLA806 3.1 76.8 1.0 C1A A:CLA806 3.1 76.8 1.0 CHB A:CLA806 3.4 76.8 1.0 CHC A:CLA806 3.4 76.8 1.0 CHA A:CLA806 3.5 76.8 1.0 CHD A:CLA806 3.5 76.8 1.0 NE2 A:GLN112 3.7 76.8 1.0 CD A:GLN112 3.7 76.8 1.0 O1A A:CLA826 4.0 75.5 1.0 O1A A:CLA806 4.2 76.8 1.0 C3D A:CLA806 4.2 76.8 1.0 C2B A:CLA806 4.3 76.8 1.0 C6 A:CLA826 4.3 75.5 1.0 C3B A:CLA806 4.3 76.8 1.0 C2C A:CLA806 4.3 76.8 1.0 C2D A:CLA806 4.3 76.8 1.0 C3C A:CLA806 4.3 76.8 1.0 C3A A:CLA806 4.4 76.8 1.0 C2A A:CLA806 4.4 76.8 1.0 C7 A:CLA826 4.6 75.5 1.0 CGA A:CLA826 4.9 75.5 1.0 CBD A:CLA806 4.9 76.8 1.0

Magnesium binding site 7 out of 158 in the Cryo-Em Structure of the Red Algal Psi-Lhcr


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cryo-Em Structure of the Red Algal Psi-Lhcr within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg807 b:79.2 occ:1.00 MG A:CLA807 0.0 79.2 1.0 NB A:CLA807 2.0 79.2 1.0 ND A:CLA807 2.0 79.2 1.0 NC A:CLA807 2.1 79.2 1.0 NA A:CLA807 2.1 79.2 1.0 C4D A:CLA807 2.9 79.2 1.0 C1B A:CLA807 3.0 79.2 1.0 OE1 A:GLN120 3.0 80.5 1.0 C4A A:CLA807 3.0 79.2 1.0 C4B A:CLA807 3.0 79.2 1.0 C1C A:CLA807 3.1 79.2 1.0 C4C A:CLA807 3.1 79.2 1.0 C1D A:CLA807 3.1 79.2 1.0 C1A A:CLA807 3.1 79.2 1.0 CHB A:CLA807 3.4 79.2 1.0 CHC A:CLA807 3.4 79.2 1.0 CHA A:CLA807 3.4 79.2 1.0 CHD A:CLA807 3.5 79.2 1.0 C17 A:CLA826 3.9 75.5 1.0 CD A:GLN120 4.0 80.5 1.0 C3D A:CLA807 4.2 79.2 1.0 C2B A:CLA807 4.2 79.2 1.0 C3B A:CLA807 4.3 79.2 1.0 C2C A:CLA807 4.3 79.2 1.0 C2D A:CLA807 4.3 79.2 1.0 C3C A:CLA807 4.3 79.2 1.0 C3A A:CLA807 4.4 79.2 1.0 C18 A:CLA826 4.4 75.5 1.0 C2A A:CLA807 4.4 79.2 1.0 NE2 A:GLN120 4.5 80.5 1.0 C19 A:CLA826 4.8 75.5 1.0 CBD A:CLA807 4.9 79.2 1.0 CBB A:CLA806 4.9 76.8 1.0

Magnesium binding site 8 out of 158 in the Cryo-Em Structure of the Red Algal Psi-Lhcr


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cryo-Em Structure of the Red Algal Psi-Lhcr within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg808 b:78.4 occ:1.00 MG A:CLA808 0.0 78.4 1.0 NB A:CLA808 2.0 78.4 1.0 ND A:CLA808 2.0 78.4 1.0 NC A:CLA808 2.1 78.4 1.0 NA A:CLA808 2.1 78.4 1.0 C4D A:CLA808 2.9 78.4 1.0 C1B A:CLA808 3.0 78.4 1.0 NE2 A:HIS176 3.0 73.4 1.0 C4A A:CLA808 3.0 78.4 1.0 C4B A:CLA808 3.1 78.4 1.0 C1C A:CLA808 3.1 78.4 1.0 C4C A:CLA808 3.1 78.4 1.0 C1D A:CLA808 3.1 78.4 1.0 C1A A:CLA808 3.1 78.4 1.0 CE1 A:HIS176 3.3 73.4 1.0 CHB A:CLA808 3.4 78.4 1.0 CHC A:CLA808 3.4 78.4 1.0 CHA A:CLA808 3.4 78.4 1.0 CHD A:CLA808 3.5 78.4 1.0 C18 A:CLA811 3.6 77.7 1.0 C16 A:CLA811 3.6 77.7 1.0 C17 A:CLA811 4.0 77.7 1.0 C3D A:CLA808 4.2 78.4 1.0 C20 A:CLA811 4.2 77.7 1.0 C2B A:CLA808 4.3 78.4 1.0 C3B A:CLA808 4.3 78.4 1.0 CD2 A:HIS176 4.3 73.4 1.0 C2C A:CLA808 4.3 78.4 1.0 C2D A:CLA808 4.3 78.4 1.0 C3C A:CLA808 4.4 78.4 1.0 C3A A:CLA808 4.4 78.4 1.0 C2A A:CLA808 4.4 78.4 1.0 C19 A:CLA811 4.5 77.7 1.0 ND1 A:HIS176 4.6 73.4 1.0 CBD A:CLA808 4.9 78.4 1.0

Magnesium binding site 9 out of 158 in the Cryo-Em Structure of the Red Algal Psi-Lhcr


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cryo-Em Structure of the Red Algal Psi-Lhcr within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg809 b:77.6 occ:1.00 MG A:CLA809 0.0 77.6 1.0 NB A:CLA809 2.0 77.6 1.0 ND A:CLA809 2.0 77.6 1.0 NC A:CLA809 2.1 77.6 1.0 NA A:CLA809 2.1 77.6 1.0 C4D A:CLA809 2.9 77.6 1.0 C1B A:CLA809 3.0 77.6 1.0 C4A A:CLA809 3.0 77.6 1.0 C4B A:CLA809 3.0 77.6 1.0 NE2 A:HIS178 3.1 77.5 1.0 C1C A:CLA809 3.1 77.6 1.0 O1A A:CLA802 3.1 77.4 1.0 C4C A:CLA809 3.1 77.6 1.0 C1A A:CLA809 3.1 77.6 1.0 C1D A:CLA809 3.1 77.6 1.0 CHB A:CLA809 3.4 77.6 1.0 CHC A:CLA809 3.4 77.6 1.0 CHA A:CLA809 3.5 77.6 1.0 CHD A:CLA809 3.5 77.6 1.0 CE1 A:HIS178 3.6 77.5 1.0 CGA A:CLA802 3.7 77.4 1.0 C3D A:CLA809 4.2 77.6 1.0 CD2 A:HIS178 4.3 77.5 1.0 C2B A:CLA809 4.3 77.6 1.0 CAA A:CLA802 4.3 77.4 1.0 C3B A:CLA809 4.3 77.6 1.0 C2C A:CLA809 4.3 77.6 1.0 C2D A:CLA809 4.3 77.6 1.0 C3C A:CLA809 4.3 77.6 1.0 C3A A:CLA809 4.4 77.6 1.0 O2A A:CLA802 4.4 77.4 1.0 C2A A:CLA809 4.4 77.6 1.0 CBA A:CLA802 4.4 77.4 1.0 C1 A:CLA802 4.5 77.4 1.0 CBA A:CLA809 4.8 77.6 1.0 ND1 A:HIS178 4.9 77.5 1.0 CBD A:CLA809 4.9 77.6 1.0 CD2 A:TYR177 4.9 76.4 1.0

Magnesium binding site 10 out of 158 in the Cryo-Em Structure of the Red Algal Psi-Lhcr


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cryo-Em Structure of the Red Algal Psi-Lhcr within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg810 b:79.9 occ:1.00 MG A:CLA810 0.0 79.9 1.0 NB A:CLA810 2.0 79.9 1.0 ND A:CLA810 2.0 79.9 1.0 NC A:CLA810 2.1 79.9 1.0 NA A:CLA810 2.1 79.9 1.0 C4D A:CLA810 2.9 79.9 1.0 C1B A:CLA810 3.0 79.9 1.0 C4A A:CLA810 3.0 79.9 1.0 NE2 A:HIS196 3.0 67.6 1.0 C4B A:CLA810 3.0 79.9 1.0 C1C A:CLA810 3.1 79.9 1.0 C4C A:CLA810 3.1 79.9 1.0 C1D A:CLA810 3.1 79.9 1.0 C1A A:CLA810 3.2 79.9 1.0 CHB A:CLA810 3.4 79.9 1.0 CHC A:CLA810 3.4 79.9 1.0 CD2 A:HIS196 3.4 67.6 1.0 CHA A:CLA810 3.5 79.9 1.0 CHD A:CLA810 3.5 79.9 1.0 C4 A:CLA810 4.1 79.9 1.0 CE1 A:HIS196 4.2 67.6 1.0 C3 A:CLA810 4.2 79.9 1.0 C3D A:CLA810 4.2 79.9 1.0 C2B A:CLA810 4.3 79.9 1.0 C3B A:CLA810 4.3 79.9 1.0 C2C A:CLA810 4.3 79.9 1.0 C2D A:CLA810 4.3 79.9 1.0 C5 A:CLA810 4.3 79.9 1.0 C3C A:CLA810 4.3 79.9 1.0 C3A A:CLA810 4.4 79.9 1.0 C2A A:CLA810 4.5 79.9 1.0 CG A:HIS196 4.7 67.6 1.0 O2A A:CLA810 4.7 79.9 1.0 C2 A:CLA810 4.9 79.9 1.0 CBD A:CLA810 4.9 79.9 1.0

X.Pi, L.Tian, H.E.Dai, X.Qin, L.Cheng, T.Kuang, S.F.Sui, J.R.Shen. Unique Organization of Photosystem I-Light-Harvesting Supercomplex Revealed By Cryo-Em From A Red Alga Proc. Natl. Acad. Sci. V. 115 4423 2018U.S.A..
ISSN: ESSN 1091-6490
PubMed: 29632169
DOI: 10.1073/PNAS.1722482115