Magnesium in PDB 5zk6: Crystal Structure of Rimk Complexed with Rpsf

The structure of Crystal Structure of Rimk Complexed with Rpsf, PDB code: 5zk6 was solved by Y.Arimura, T.Kono, K.Kino, H.Kurumizaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.97 / 3.15
Space group	P 64 2 2
Cell size a, b, c (Å), α, β, γ (°)	131.272, 131.272, 168.571, 90.00, 90.00, 120.00
R / Rfree (%)	20.8 / 24.5

The binding sites of Magnesium atom in the Crystal Structure of Rimk Complexed with Rpsf (pdb code 5zk6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Rimk Complexed with Rpsf, PDB code: 5zk6:

Magnesium binding site 1 out of 1 in the Crystal Structure of Rimk Complexed with Rpsf


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Rimk Complexed with Rpsf within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1002 b:0.5 occ:1.00 OE1 A:GLU260 2.3 0.0 1.0 O3B A:ADP1001 2.5 0.7 1.0 O2A A:ADP1001 2.5 0.9 1.0 CD A:GLU260 3.0 0.0 1.0 OE2 A:GLU260 3.0 0.5 1.0 ND2 A:ASN213 3.4 0.1 1.0 PB A:ADP1001 3.6 0.8 1.0 O1B A:ADP1001 3.8 0.9 1.0 PA A:ADP1001 3.9 0.2 1.0 OD1 A:ASP248 3.9 0.5 1.0 C5' A:ADP1001 4.0 0.5 1.0 NH2 A:ARG189 4.1 1.0 1.0 OD1 A:ASN213 4.1 0.2 1.0 CG A:ASN213 4.2 0.6 1.0 O3A A:ADP1001 4.2 0.1 1.0 CG A:GLU260 4.5 0.4 1.0 O5' A:ADP1001 4.6 0.0 1.0 NH2 A:ARG203 4.6 0.6 1.0 CE A:MET259 4.7 0.2 1.0 ND2 A:ASN262 4.9 0.5 1.0 O2B A:ADP1001 4.9 0.1 1.0 O1A A:ADP1001 5.0 0.1 1.0

J.Ohnuki, Y.Arimura, T.Kono, K.Kino, H.Kurumizaka, M.Takano. Molecular Dynamics Prediction of Substrate Recognition By Poly-Alpha-L-Glutamate Synthetase To Be Published.