Magnesium in PDB 6dby: Crystal Structure of Nudix 1 From Arabidopsis Thaliana

All present enzymatic activity of Crystal Structure of Nudix 1 From Arabidopsis Thaliana:
3.6.1.22; 3.6.1.55; 3.6.1.67;

The structure of Crystal Structure of Nudix 1 From Arabidopsis Thaliana, PDB code: 6dby was solved by J.P.Noel, S.T.Thomas, N.Dudareva, L.K.Henry, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	61.91 / 2.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	36.190, 73.070, 116.540, 90.00, 90.00, 90.00
R / Rfree (%)	18.6 / 22.1

The binding sites of Magnesium atom in the Crystal Structure of Nudix 1 From Arabidopsis Thaliana (pdb code 6dby). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Nudix 1 From Arabidopsis Thaliana, PDB code: 6dby:

Magnesium binding site 1 out of 1 in the Crystal Structure of Nudix 1 From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Nudix 1 From Arabidopsis Thaliana within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg201 b:24.6 occ:1.00 O A:HOH397 2.1 23.0 1.0 O A:HOH324 2.1 16.9 1.0 O A:GLY19 3.7 11.1 1.0 O A:HOH338 4.1 16.9 1.0 O A:HOH361 4.3 18.5 1.0 C A:GLY19 4.6 11.3 1.0 OD1 A:ASN20 4.8 11.1 1.0 CA A:GLY19 5.0 14.3 1.0 O A:HOH404 5.0 34.3 1.0

L.K.Henry, S.T.Thomas, J.R.Widhalm, J.H.Lynch, T.C.Davis, S.A.Kessler, J.Bohlmann, J.P.Noel, N.Dudareva. Contribution of Isopentenyl Phosphate to Plant Terpenoid Metabolism. Nat Plants V. 4 721 2018.
ISSN: ESSN 2055-0278
PubMed: 30127411
DOI: 10.1038/S41477-018-0220-Z