Atomistry » Magnesium » PDB 6eli-6f5p » 6evw
Atomistry »
  Magnesium »
    PDB 6eli-6f5p »
      6evw »

Magnesium in PDB 6evw: Cryo-Em Structure of Gmpcpp-Microtubule Co-Polymerised with Doublecortin

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Gmpcpp-Microtubule Co-Polymerised with Doublecortin (pdb code 6evw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the Cryo-Em Structure of Gmpcpp-Microtubule Co-Polymerised with Doublecortin, PDB code: 6evw:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 12 in 6evw

Go back to Magnesium Binding Sites List in 6evw
Magnesium binding site 1 out of 12 in the Cryo-Em Structure of Gmpcpp-Microtubule Co-Polymerised with Doublecortin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Gmpcpp-Microtubule Co-Polymerised with Doublecortin within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg502

b:0.4
occ:1.00
 O2B E:GTP501 2.1 0.3 1.0
O1G E:GTP501 2.1 0.3 1.0
O3A E:GTP501 2.2 0.3 1.0
OE1 E:GLN11 2.5 94.8 1.0
PB E:GTP501 2.5 0.3 1.0
O2A E:GTP501 3.0 0.3 1.0
CB E:GLN11 3.1 94.8 1.0
PA E:GTP501 3.1 0.3 1.0
O3B E:GTP501 3.1 0.3 1.0
PG E:GTP501 3.2 0.3 1.0
OE2 E:GLU71 3.4 0.3 1.0
CD E:GLN11 3.5 94.8 1.0
O1A E:GTP501 3.8 0.3 1.0
CG E:GLN11 3.9 94.8 1.0
O1B E:GTP501 3.9 0.3 1.0
O3G E:GTP501 4.2 0.3 1.0
N E:GLN11 4.2 94.8 1.0
O2G E:GTP501 4.2 0.3 1.0
CA E:GLN11 4.3 94.8 1.0
CD E:GLU71 4.4 0.3 1.0
O5' E:GTP501 4.5 0.3 1.0
NE2 E:GLN11 4.7 94.8 1.0
NZ G:LYS252 4.8 94.3 1.0

Magnesium binding site 2 out of 12 in 6evw

Go back to Magnesium Binding Sites List in 6evw
Magnesium binding site 2 out of 12 in the Cryo-Em Structure of Gmpcpp-Microtubule Co-Polymerised with Doublecortin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Gmpcpp-Microtubule Co-Polymerised with Doublecortin within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg502

b:0.4
occ:1.00
 O2B J:GTP501 2.1 0.5 1.0
O1G J:GTP501 2.1 0.5 1.0
OE1 J:GLN11 2.4 89.0 1.0
O3A J:GTP501 2.6 0.5 1.0
PB J:GTP501 2.7 0.5 1.0
OE2 J:GLU71 2.9 0.6 1.0
CB J:GLN11 3.0 89.0 1.0
PG J:GTP501 3.3 0.5 1.0
O3B J:GTP501 3.3 0.5 1.0
CD J:GLN11 3.4 89.0 1.0
O2A J:GTP501 3.4 0.5 1.0
PA J:GTP501 3.5 0.5 1.0
CG J:GLN11 3.8 89.0 1.0
CD J:GLU71 3.9 0.6 1.0
O1A J:GTP501 4.1 0.5 1.0
O1B J:GTP501 4.1 0.5 1.0
N J:GLN11 4.2 89.0 1.0
O2G J:GTP501 4.2 0.5 1.0
CA J:GLN11 4.2 89.0 1.0
O3G J:GTP501 4.4 0.5 1.0
OE1 J:GLU71 4.5 0.6 1.0
NE2 J:GLN11 4.6 89.0 1.0
NZ F:LYS252 4.6 88.7 1.0
CG J:GLU71 4.7 0.6 1.0
O5' J:GTP501 4.9 0.5 1.0

Magnesium binding site 3 out of 12 in 6evw

Go back to Magnesium Binding Sites List in 6evw
Magnesium binding site 3 out of 12 in the Cryo-Em Structure of Gmpcpp-Microtubule Co-Polymerised with Doublecortin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Gmpcpp-Microtubule Co-Polymerised with Doublecortin within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg502

b:0.2
occ:1.00
 O2B C:GTP501 2.1 0.6 1.0
O1G C:GTP501 2.1 0.6 1.0
OE1 C:GLN11 2.4 91.9 1.0
O3A C:GTP501 2.4 0.6 1.0
PB C:GTP501 2.6 0.6 1.0
CB C:GLN11 2.9 91.9 1.0
O2A C:GTP501 3.1 0.6 1.0
PG C:GTP501 3.1 0.6 1.0
O3B C:GTP501 3.2 0.6 1.0
OE2 C:GLU71 3.2 0.2 1.0
PA C:GTP501 3.3 0.6 1.0
CD C:GLN11 3.3 91.9 1.0
CG C:GLN11 3.7 91.9 1.0
O1A C:GTP501 3.8 0.6 1.0
O1B C:GTP501 4.0 0.6 1.0
O2G C:GTP501 4.0 0.6 1.0
N C:GLN11 4.0 91.9 1.0
CA C:GLN11 4.1 91.9 1.0
CD C:GLU71 4.1 0.2 1.0
O3G C:GTP501 4.4 0.6 1.0
NE2 C:GLN11 4.6 91.9 1.0
O5' C:GTP501 4.7 0.6 1.0
OE1 C:GLU71 4.8 0.2 1.0
CG C:GLU71 4.9 0.2 1.0

Magnesium binding site 4 out of 12 in 6evw

Go back to Magnesium Binding Sites List in 6evw
Magnesium binding site 4 out of 12 in the Cryo-Em Structure of Gmpcpp-Microtubule Co-Polymerised with Doublecortin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Gmpcpp-Microtubule Co-Polymerised with Doublecortin within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg502

b:0.8
occ:1.00
 O2B L:GTP501 2.1 0.8 1.0
O1G L:GTP501 2.1 0.8 1.0
OE1 L:GLN11 2.3 96.6 1.0
O3A L:GTP501 2.4 0.8 1.0
PB L:GTP501 2.6 0.8 1.0
CB L:GLN11 2.8 96.6 1.0
O2A L:GTP501 3.1 0.8 1.0
OE2 L:GLU71 3.1 0.3 1.0
O3B L:GTP501 3.3 0.8 1.0
PA L:GTP501 3.3 0.8 1.0
PG L:GTP501 3.3 0.8 1.0
CD L:GLN11 3.3 96.6 1.0
CG L:GLN11 3.6 96.6 1.0
O1A L:GTP501 3.8 0.8 1.0
O2G L:GTP501 4.0 0.8 1.0
O1B L:GTP501 4.0 0.8 1.0
N L:GLN11 4.0 96.6 1.0
CA L:GLN11 4.1 96.6 1.0
CD L:GLU71 4.1 0.3 1.0
O3G L:GTP501 4.4 0.8 1.0
NE2 L:GLN11 4.5 96.6 1.0
O5' L:GTP501 4.7 0.8 1.0
OE1 L:GLU71 4.8 0.3 1.0
CG L:GLU71 4.9 0.3 1.0
NZ D:LYS252 5.0 91.7 1.0

Magnesium binding site 5 out of 12 in 6evw

Go back to Magnesium Binding Sites List in 6evw
Magnesium binding site 5 out of 12 in the Cryo-Em Structure of Gmpcpp-Microtubule Co-Polymerised with Doublecortin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of Gmpcpp-Microtubule Co-Polymerised with Doublecortin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:0.1
occ:1.00
 O2B A:GTP501 2.1 0.1 1.0
O1G A:GTP501 2.1 0.1 1.0
OE1 A:GLN11 2.4 95.4 1.0
O3A A:GTP501 2.5 0.1 1.0
PB A:GTP501 2.6 0.1 1.0
CB A:GLN11 2.9 95.4 1.0
OE2 A:GLU71 3.0 0.1 1.0
PG A:GTP501 3.1 0.1 1.0
O3B A:GTP501 3.2 0.1 1.0
O2A A:GTP501 3.3 0.1 1.0
CD A:GLN11 3.4 95.4 1.0
PA A:GTP501 3.5 0.1 1.0
CG A:GLN11 3.7 95.4 1.0
O2G A:GTP501 3.9 0.1 1.0
CD A:GLU71 4.0 0.1 1.0
O1A A:GTP501 4.0 0.1 1.0
N A:GLN11 4.1 95.4 1.0
O1B A:GTP501 4.1 0.1 1.0
CA A:GLN11 4.1 95.4 1.0
O3G A:GTP501 4.4 0.1 1.0
NE2 A:GLN11 4.6 95.4 1.0
OE1 A:GLU71 4.6 0.1 1.0
CG A:GLU71 4.8 0.1 1.0
O5' A:GTP501 4.9 0.1 1.0

Magnesium binding site 6 out of 12 in 6evw

Go back to Magnesium Binding Sites List in 6evw
Magnesium binding site 6 out of 12 in the Cryo-Em Structure of Gmpcpp-Microtubule Co-Polymerised with Doublecortin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryo-Em Structure of Gmpcpp-Microtubule Co-Polymerised with Doublecortin within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Mg502

b:0.1
occ:1.00
 O2B K:GTP501 2.1 0.8 1.0
O1G K:GTP501 2.1 0.8 1.0
OE1 K:GLN11 2.3 89.3 1.0
O3A K:GTP501 2.6 0.8 1.0
PB K:GTP501 2.7 0.8 1.0
CB K:GLN11 2.9 89.3 1.0
OE2 K:GLU71 2.9 0.4 1.0
PG K:GTP501 3.2 0.8 1.0
O3B K:GTP501 3.3 0.8 1.0
CD K:GLN11 3.3 89.3 1.0
O2A K:GTP501 3.4 0.8 1.0
PA K:GTP501 3.5 0.8 1.0
CG K:GLN11 3.7 89.3 1.0
O2G K:GTP501 3.8 0.8 1.0
CD K:GLU71 3.8 0.4 1.0
O1A K:GTP501 4.0 0.8 1.0
N K:GLN11 4.0 89.3 1.0
CA K:GLN11 4.1 89.3 1.0
O1B K:GTP501 4.1 0.8 1.0
O3G K:GTP501 4.5 0.8 1.0
NE2 K:GLN11 4.5 89.3 1.0
OE1 K:GLU71 4.5 0.4 1.0
CG K:GLU71 4.6 0.4 1.0
O5' K:GTP501 5.0 0.8 1.0
OD1 K:ASP69 5.0 0.5 1.0

Magnesium binding site 7 out of 12 in 6evw

Go back to Magnesium Binding Sites List in 6evw
Magnesium binding site 7 out of 12 in the Cryo-Em Structure of Gmpcpp-Microtubule Co-Polymerised with Doublecortin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cryo-Em Structure of Gmpcpp-Microtubule Co-Polymerised with Doublecortin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg502

b:0.5
occ:1.00
 OE1 B:GLN11 2.1 0.1 1.0
O1B B:G2P501 2.1 0.4 1.0
O2G B:G2P501 2.2 0.4 1.0
PB B:G2P501 2.5 0.4 1.0
C3A B:G2P501 2.5 0.4 1.0
CB B:GLN11 2.8 0.1 1.0
O3B B:G2P501 3.1 0.4 1.0
CD B:GLN11 3.1 0.1 1.0
PG B:G2P501 3.2 0.4 1.0
CG B:GLN11 3.5 0.1 1.0
PA B:G2P501 3.8 0.4 1.0
OE2 B:GLU69 3.9 0.3 1.0
O2B B:G2P501 3.9 0.4 1.0
CA B:GLN11 4.0 0.1 1.0
N B:GLN11 4.1 0.1 1.0
O1G B:G2P501 4.1 0.4 1.0
O1A B:G2P501 4.2 0.4 1.0
O2A B:G2P501 4.3 0.4 1.0
NE2 B:GLN11 4.3 0.1 1.0
O3G B:G2P501 4.3 0.4 1.0
C B:GLY10 4.7 0.6 1.0
CD B:GLU69 5.0 0.3 1.0

Magnesium binding site 8 out of 12 in 6evw

Go back to Magnesium Binding Sites List in 6evw
Magnesium binding site 8 out of 12 in the Cryo-Em Structure of Gmpcpp-Microtubule Co-Polymerised with Doublecortin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cryo-Em Structure of Gmpcpp-Microtubule Co-Polymerised with Doublecortin within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg502

b:1.0
occ:1.00
 O1B F:G2P501 2.1 0.4 1.0
O2G F:G2P501 2.2 0.4 1.0
OE1 F:GLN11 2.2 95.2 1.0
PB F:G2P501 2.5 0.4 1.0
C3A F:G2P501 2.5 0.4 1.0
CB F:GLN11 2.9 95.2 1.0
O3B F:G2P501 3.1 0.4 1.0
CD F:GLN11 3.1 95.2 1.0
PG F:G2P501 3.2 0.4 1.0
CG F:GLN11 3.6 95.2 1.0
OE2 F:GLU69 3.8 0.7 1.0
PA F:G2P501 3.8 0.4 1.0
O2B F:G2P501 4.0 0.4 1.0
CA F:GLN11 4.1 95.2 1.0
O1G F:G2P501 4.1 0.4 1.0
N F:GLN11 4.1 95.2 1.0
O1A F:G2P501 4.2 0.4 1.0
O3G F:G2P501 4.3 0.4 1.0
O2A F:G2P501 4.3 0.4 1.0
NE2 F:GLN11 4.3 95.2 1.0
C F:GLY10 4.7 93.1 1.0
CD F:GLU69 4.9 0.7 1.0
OG1 F:THR143 5.0 0.5 1.0

Magnesium binding site 9 out of 12 in 6evw

Go back to Magnesium Binding Sites List in 6evw
Magnesium binding site 9 out of 12 in the Cryo-Em Structure of Gmpcpp-Microtubule Co-Polymerised with Doublecortin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cryo-Em Structure of Gmpcpp-Microtubule Co-Polymerised with Doublecortin within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg502

b:0.9
occ:1.00
 OE1 G:GLN11 2.1 0.4 1.0
O1B G:G2P501 2.1 0.9 1.0
O2G G:G2P501 2.1 0.9 1.0
PB G:G2P501 2.5 0.9 1.0
C3A G:G2P501 2.5 0.9 1.0
CB G:GLN11 2.8 0.4 1.0
CD G:GLN11 3.1 0.4 1.0
O3B G:G2P501 3.1 0.9 1.0
PG G:G2P501 3.2 0.9 1.0
CG G:GLN11 3.5 0.4 1.0
PA G:G2P501 3.8 0.9 1.0
OE2 G:GLU69 3.9 0.2 1.0
O2B G:G2P501 3.9 0.9 1.0
CA G:GLN11 4.1 0.4 1.0
O1G G:G2P501 4.1 0.9 1.0
N G:GLN11 4.2 0.4 1.0
O1A G:G2P501 4.2 0.9 1.0
O3G G:G2P501 4.3 0.9 1.0
O2A G:G2P501 4.3 0.9 1.0
NE2 G:GLN11 4.3 0.4 1.0
C G:GLY10 4.8 0.1 1.0
CD G:GLU69 5.0 0.2 1.0

Magnesium binding site 10 out of 12 in 6evw

Go back to Magnesium Binding Sites List in 6evw
Magnesium binding site 10 out of 12 in the Cryo-Em Structure of Gmpcpp-Microtubule Co-Polymerised with Doublecortin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cryo-Em Structure of Gmpcpp-Microtubule Co-Polymerised with Doublecortin within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg502

b:0.3
occ:1.00
 O1B D:G2P501 2.1 0.2 1.0
OE1 D:GLN11 2.1 0.5 1.0
O2G D:G2P501 2.2 0.2 1.0
PB D:G2P501 2.5 0.2 1.0
C3A D:G2P501 2.5 0.2 1.0
CB D:GLN11 2.9 0.5 1.0
O3B D:G2P501 3.1 0.2 1.0
CD D:GLN11 3.1 0.5 1.0
PG D:G2P501 3.2 0.2 1.0
CG D:GLN11 3.6 0.5 1.0
OE2 D:GLU69 3.8 0.4 1.0
PA D:G2P501 3.8 0.2 1.0
O2B D:G2P501 4.0 0.2 1.0
O1G D:G2P501 4.1 0.2 1.0
CA D:GLN11 4.1 0.5 1.0
N D:GLN11 4.2 0.5 1.0
O1A D:G2P501 4.2 0.2 1.0
O2A D:G2P501 4.3 0.2 1.0
NE2 D:GLN11 4.3 0.5 1.0
O3G D:G2P501 4.3 0.2 1.0
C D:GLY10 4.8 0.2 1.0
CD D:GLU69 4.9 0.4 1.0
OG1 D:THR143 5.0 0.1 1.0

Reference:

S.W.Manka, C.A.Moores. The Role of Tubulin-Tubulin Lattice Contacts in the Mechanism of Microtubule Dynamic Instability. Nat. Struct. Mol. Biol. V. 25 607 2018.
ISSN: ESSN 1545-9985
PubMed: 29967541
DOI: 10.1038/S41594-018-0087-8
Page generated: Tue Oct 1 00:02:41 2024

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy